Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | CEP76_RS02255 | Genome accession | NZ_CP022037 |
| Coordinates | 437893..438438 (+) | Length | 181 a.a. |
| NCBI ID | WP_010944348.1 | Uniprot ID | Q7VNZ5 |
| Organism | [Haemophilus] ducreyi strain FDAARGOS_297 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 432893..443438
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP76_RS02215 (CEP76_02220) | - | 433082..433435 (+) | 354 | WP_010944352.1 | RidA family protein | - |
| CEP76_RS02220 (CEP76_02225) | sodA | 433574..434215 (+) | 642 | WP_010944351.1 | superoxide dismutase [Mn] | - |
| CEP76_RS02230 (CEP76_02235) | gltX | 434469..435908 (-) | 1440 | WP_010944350.1 | glutamate--tRNA ligase | - |
| CEP76_RS02250 (CEP76_02255) | - | 436760..437854 (+) | 1095 | WP_231084876.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| CEP76_RS02255 (CEP76_02260) | pilF | 437893..438438 (+) | 546 | WP_010944348.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| CEP76_RS02260 (CEP76_02265) | - | 438509..440827 (+) | 2319 | WP_010944347.1 | Tex family protein | - |
| CEP76_RS02265 (CEP76_02270) | - | 440884..441888 (-) | 1005 | WP_010944346.1 | peptide ABC transporter ATP-binding protein | - |
| CEP76_RS02270 (CEP76_02275) | dppD | 441866..442870 (-) | 1005 | WP_010944345.1 | dipeptide ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20237.97 Da Isoelectric Point: 8.1148
>NTDB_id=236043 CEP76_RS02255 WP_010944348.1 437893..438438(+) (pilF) [[Haemophilus] ducreyi strain FDAARGOS_297]
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
MAKILKNLTACFAIVMLLGCSSSYTGSSVSTFNRNKIVQARINLALAYLEQHHFAKAKENIDKALQHDAQDYLPYSALAY
YYQQIGDLTQAANAYQTALTLGNNTPDVLNNYGTFLCHQGKFDLAYQQFEQAIKSQQSYYHQADSLENIILCAKQEKNTA
KIAIALQQLTALDKTRADALR
Nucleotide
Download Length: 546 bp
>NTDB_id=236043 CEP76_RS02255 WP_010944348.1 437893..438438(+) (pilF) [[Haemophilus] ducreyi strain FDAARGOS_297]
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
ATGGCAAAAATTTTAAAAAATCTAACCGCTTGTTTCGCTATTGTTATGCTGTTAGGTTGTTCCTCTTCTTATACTGGCTC
ATCAGTATCCACATTTAACCGAAATAAAATAGTCCAAGCACGCATTAATTTAGCATTAGCTTATCTAGAACAACACCATT
TTGCTAAAGCAAAAGAAAATATTGATAAAGCACTCCAACATGACGCTCAAGATTATTTACCTTATTCAGCACTGGCTTAC
TATTATCAACAAATAGGTGATTTAACTCAAGCCGCTAACGCCTACCAGACAGCACTAACTCTAGGAAATAATACGCCTGA
TGTATTAAATAATTACGGTACTTTTTTATGCCATCAAGGTAAATTTGACCTCGCTTATCAGCAATTTGAACAAGCGATAA
AGAGTCAACAATCTTACTATCATCAAGCAGATAGCTTAGAGAATATTATTCTTTGTGCCAAACAAGAGAAAAATACCGCT
AAAATAGCTATTGCATTACAACAATTAACAGCGCTAGACAAAACACGCGCAGATGCACTACGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
58.289 |
100 |
0.602 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
43.889 |
99.448 |
0.436 |