Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6997_RS26870 Genome accession   NZ_CP027577
Coordinates   4946688..4947425 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-4225     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4941688..4952425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6997_RS26855 clpC 4942142..4944715 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6997_RS26860 yfiH 4944845..4945576 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6997_RS26865 rluD 4945573..4946553 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6997_RS26870 comL 4946688..4947425 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6997_RS26880 raiA 4947696..4948037 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6997_RS26885 pheL 4948141..4948188 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6997_RS26890 pheA 4948287..4949447 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6997_RS26895 tyrA 4949490..4950611 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6997_RS26900 aroF 4950622..4951692 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6997_RS26905 yfiL 4951902..4952267 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=236037 C6997_RS26870 WP_000197686.1 4946688..4947425(+) (comL) [Escherichia coli strain 2013C-4225]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=236037 C6997_RS26870 WP_000197686.1 4946688..4947425(+) (comL) [Escherichia coli strain 2013C-4225]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376