Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A2F94_RS23940 Genome accession   NZ_CP027573
Coordinates   4502051..4502788 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-4081     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4497051..4507788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2F94_RS23905 yfiL 4497209..4497574 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  A2F94_RS23910 aroF 4497784..4498854 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A2F94_RS23915 tyrA 4498865..4499986 (+) 1122 WP_000225214.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A2F94_RS23920 pheA 4500029..4501189 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  A2F94_RS23925 pheL 4501288..4501335 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A2F94_RS23930 raiA 4501439..4501780 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A2F94_RS23940 comL 4502051..4502788 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A2F94_RS23945 rluD 4502923..4503903 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A2F94_RS23950 yfiH 4503900..4504631 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  A2F94_RS23955 clpC 4504761..4507334 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=235955 A2F94_RS23940 WP_000197686.1 4502051..4502788(-) (comL) [Escherichia coli strain 2013C-4081]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=235955 A2F94_RS23940 WP_000197686.1 4502051..4502788(-) (comL) [Escherichia coli strain 2013C-4081]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376