Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C6Y56_RS29415 Genome accession   NZ_CP027561
Coordinates   4064561..4065067 (-) Length   168 a.a.
NCBI ID   WP_283241438.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 4059561..4070067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS18270 (C6Y56_18515) - 4059963..4060496 (+) 534 WP_169431062.1 sigma-70 family RNA polymerase sigma factor -
  C6Y56_RS18275 (C6Y56_18520) - 4060493..4061188 (+) 696 WP_169431063.1 anti-sigma factor -
  C6Y56_RS18280 (C6Y56_18525) - 4061302..4061664 (+) 363 WP_169431064.1 hypothetical protein -
  C6Y56_RS18285 (C6Y56_18530) - 4061743..4062831 (-) 1089 WP_169431065.1 DUF1615 domain-containing protein -
  C6Y56_RS18290 (C6Y56_18535) - 4063016..4064557 (+) 1542 WP_169431066.1 FAD-dependent oxidoreductase -
  C6Y56_RS29415 comA 4064561..4065067 (-) 507 WP_283241438.1 ATP-binding cassette domain-containing protein Regulator
  C6Y56_RS29420 - 4065043..4065135 (-) 93 WP_283241342.1 ATP-binding cassette domain-containing protein -
  C6Y56_RS18295 (C6Y56_18540) - 4065099..4066697 (-) 1599 WP_283241343.1 cysteine peptidase family C39 domain-containing protein -
  C6Y56_RS18300 (C6Y56_18545) - 4066694..4066951 (-) 258 WP_169431067.1 hypothetical protein -
  C6Y56_RS18305 - 4067133..4067309 (+) 177 WP_164872156.1 hypothetical protein -
  C6Y56_RS18310 (C6Y56_18550) - 4067424..4068206 (+) 783 WP_169431068.1 ThiF family adenylyltransferase -
  C6Y56_RS18315 (C6Y56_18555) - 4068196..4068702 (+) 507 WP_169431069.1 GNAT family protein -
  C6Y56_RS18320 (C6Y56_18560) hemB 4068751..4069725 (-) 975 WP_169431070.1 porphobilinogen synthase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18719.45 Da        Isoelectric Point: 6.4762

>NTDB_id=235884 C6Y56_RS29415 WP_283241438.1 4064561..4065067(-) (comA) [Pseudomonas fluorescens strain G7]
MFLGGVELTRLGLRNYRQMTGTVMQDDQLFTGTLSDNICFFDAQPDPGQVIRCSEQAAVHDEIMALPMKYNTLVGDLGSG
LSGGQRQRILLARALYRSPRLLVLDEATSHLDVWNEQRVNAAITQEAMTRILVAHRPQTLAMAQRVVTLDQGRIIADLTH
RVDDCPGR

Nucleotide


Download         Length: 507 bp        

>NTDB_id=235884 C6Y56_RS29415 WP_283241438.1 4064561..4065067(-) (comA) [Pseudomonas fluorescens strain G7]
ATTTTTCTGGGCGGGGTTGAGCTGACGCGTCTTGGGTTGAGGAACTATCGCCAGATGACTGGAACAGTGATGCAGGACGA
TCAACTGTTCACCGGAACGCTTTCGGACAATATCTGTTTTTTCGACGCTCAGCCGGACCCGGGGCAAGTGATCAGGTGCT
CGGAACAAGCGGCGGTGCATGATGAAATCATGGCGCTGCCGATGAAGTACAACACGCTTGTCGGTGATCTTGGATCAGGC
CTGTCAGGCGGCCAGAGACAACGCATACTGCTGGCTCGCGCATTGTACCGATCGCCGAGGTTGCTGGTGCTGGACGAAGC
CACCAGTCATCTGGATGTCTGGAACGAGCAACGGGTCAATGCCGCCATCACACAGGAGGCAATGACCCGAATACTGGTTG
CCCATCGTCCGCAAACCCTTGCAATGGCGCAACGGGTAGTGACTTTGGATCAAGGGCGAATCATCGCGGATCTCACGCAT
AGGGTCGATGATTGCCCTGGTCGCTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(10-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

38.509

95.833

0.369
  comA Streptococcus mitis NCTC 12261

38.125

95.238

0.363