Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   C6Y56_RS20115 Genome accession   NZ_CP027561
Coordinates   4455425..4455763 (-) Length   112 a.a.
NCBI ID   WP_169431354.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4450425..4460763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS20090 (C6Y56_20355) - 4451312..4451479 (+) 168 WP_065257130.1 DUF2897 family protein -
  C6Y56_RS20095 (C6Y56_20360) - 4451525..4452376 (-) 852 WP_169431350.1 DUF1989 domain-containing protein -
  C6Y56_RS20100 (C6Y56_20365) - 4452552..4453109 (+) 558 WP_169431351.1 TetR/AcrR family transcriptional regulator -
  C6Y56_RS20105 (C6Y56_20370) fabF 4453106..4454380 (-) 1275 WP_169431352.1 beta-ketoacyl-ACP synthase II -
  C6Y56_RS20110 (C6Y56_20375) - 4454413..4455207 (-) 795 WP_169431353.1 SDR family oxidoreductase -
  C6Y56_RS20115 (C6Y56_20380) comEA/comE1 4455425..4455763 (-) 339 WP_169431354.1 helix-hairpin-helix domain-containing protein Machinery gene
  C6Y56_RS20120 (C6Y56_20385) - 4455876..4457870 (-) 1995 WP_169431355.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  C6Y56_RS20125 (C6Y56_20390) - 4458265..4459029 (+) 765 WP_169431356.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 11858.53 Da        Isoelectric Point: 5.1486

>NTDB_id=235838 C6Y56_RS20115 WP_169431354.1 4455425..4455763(-) (comEA/comE1) [Pseudomonas fluorescens strain G7]
MRNGFFYSLFFALLASASIATVAAPLAVSQTEKTTVVAEVTDRLASTEKVDLNGADAATLQKQLSGVGEAKAKAIVAYRD
ANGPFASVEELLEVKGIGKAILDRNRDKLEVN

Nucleotide


Download         Length: 339 bp        

>NTDB_id=235838 C6Y56_RS20115 WP_169431354.1 4455425..4455763(-) (comEA/comE1) [Pseudomonas fluorescens strain G7]
ATGCGTAACGGTTTTTTCTACTCTCTGTTTTTTGCACTGCTTGCCAGCGCCTCAATAGCCACTGTTGCTGCCCCTCTTGC
CGTCTCTCAAACGGAGAAGACGACAGTGGTCGCGGAAGTGACCGACAGGTTGGCGTCGACTGAAAAGGTCGATCTCAACG
GCGCCGATGCCGCTACCTTGCAAAAGCAGTTATCCGGTGTAGGGGAAGCGAAAGCCAAGGCGATTGTTGCCTACCGTGAT
GCTAATGGGCCATTTGCCTCGGTAGAAGAATTGCTGGAAGTGAAGGGCATCGGCAAAGCGATCCTGGATCGCAATCGCGA
CAAGCTGGAAGTGAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(47-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

43.519

96.429

0.42
  comE1/comEA Haemophilus influenzae Rd KW20

44.118

91.071

0.402