Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   TRNA_RS34350 Genome accession   NC_006270
Coordinates   2512031..2512831 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2507031..2517831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS34315 (BL05262) - 2508222..2508476 (+) 255 WP_003183348.1 DUF2627 domain-containing protein -
  TRNA_RS34320 (BL05263) - 2508527..2509252 (-) 726 WP_003183351.1 glycerophosphodiester phosphodiesterase -
  TRNA_RS34325 (BL01514) - 2509386..2510006 (-) 621 WP_003183353.1 N-acetylmuramoyl-L-alanine amidase family protein -
  TRNA_RS34330 (BL01515) - 2510042..2510362 (-) 321 WP_003183355.1 hypothetical protein -
  TRNA_RS44155 - 2510361..2510693 (+) 333 WP_223307051.1 hypothetical protein -
  TRNA_RS34340 (BL01516) - 2510848..2511231 (-) 384 WP_003183357.1 serine O-acetyltransferase -
  TRNA_RS34345 (BL01517) - 2511362..2511658 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  TRNA_RS34350 (BL01518) spo0A 2512031..2512831 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  TRNA_RS34355 (BL01519) spoIVB 2513121..2514437 (-) 1317 WP_044051837.1 SpoIVB peptidase -
  TRNA_RS34360 (BL01520) recN 2514587..2516317 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  TRNA_RS34365 (BL01521) ahrC 2516349..2516798 (-) 450 WP_003183369.1 transcriptional regulator AhrC/ArgR -
  TRNA_RS34370 (BL01522) - 2516964..2517809 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=23575 TRNA_RS34350 WP_003183361.1 2512031..2512831(-) (spo0A) [Bacillus licheniformis DSM 13 = ATCC 14580]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=23575 TRNA_RS34350 WP_003183361.1 2512031..2512831(-) (spo0A) [Bacillus licheniformis DSM 13 = ATCC 14580]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment