Detailed information NTG0023576

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BJE04_RS06645
• Genome accession: NC_005139
• Coordinates: 1351662..1353011 (+)
• Length: 449 a.a.
• NCBI ID: WP_011150000.1
• Uniprot ID: -
• Organism: Vibrio vulnificus YJ016
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1346662..1358011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJE04_RS06630 (VV1321)	lrp	1347408..1347902 (+)	495	WP_011080767.1	leucine-responsive transcriptional regulator Lrp	-
BJE04_RS06635 (VV1322)	-	1348047..1350986 (+)	2940	WP_011149999.1	DNA translocase FtsK	-
BJE04_RS06640 (VV1323)	lolA	1351059..1351655 (+)	597	WP_011080765.1	outer membrane lipoprotein chaperone LolA	-
BJE04_RS06645 (VV1324)	rarA	1351662..1353011 (+)	1350	WP_011150000.1	replication-associated recombination protein A	Machinery gene
BJE04_RS06650 (VV1325)	serS	1353103..1354410 (+)	1308	WP_011150001.1	serine--tRNA ligase	-
BJE04_RS06655 (VV1326)	bioA	1354472..1355749 (-)	1278	WP_043877127.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
BJE04_RS06660 (VV1327)	bioB	1355890..1356942 (+)	1053	WP_011080761.1	biotin synthase BioB	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49694.06 Da
• Isoelectric Point: 5.8552

>NTDB_id=23576 BJE04_RS06645 WP_011150000.1 1351662..1353011(+) (rarA) [Vibrio vulnificus YJ016]
MSNYTLDFSGDEDFRPLAARMRPETIEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNKEEISLALNQAINDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKAITLKLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPFHLRNAPTGLMKDLGYGEGYRYAHDEPGAY
AAGEQYFPAEIADRKYYQPTNRGLESKIAEKLDYLANLDANSPQKRYEK

Nucleotide

• Length: 1350 bp

>NTDB_id=23576 BJE04_RS06645 WP_011150000.1 1351662..1353011(+) (rarA) [Vibrio vulnificus YJ016]
GTGTCAAATTACACCTTAGATTTTTCAGGGGACGAAGATTTTCGTCCCCTTGCTGCTCGTATGAGACCGGAAACGATCGA
ACAGTACATCGGTCAGCAGCATATTTTAGGTCCTGGTAAGCCATTACGTCGCGCGCTAGAGGCCGGCCACATTCATTCAA
TGATTTTGTGGGGGCCTCCAGGTACAGGCAAGACAACATTAGCGGAAGTAGCCGCAAACTACGCCAACGCGGAAGTTGAA
CGCGTCTCTGCGGTCACGTCCGGCGTGAAAGAAATTCGTGCCGCAATTGAAAAAGCACGCGAGAACAAAATGGCGGGTCG
TCGCACCATCTTGTTTGTGGATGAGGTACATCGCTTTAATAAATCACAGCAAGATGCCTTCTTACCGCACATTGAAGATG
GAACAGTGACTTTTATCGGCGCGACCACAGAAAATCCATCGTTTGAACTGAACAACGCATTATTGTCACGTGCTCGTGTG
TATAAGCTTACGTCACTCAACAAAGAAGAAATCTCACTGGCATTAAACCAAGCGATCAACGATAAACAACGTGGTCTGGG
TAATACACCAGCACACTTTGCTGATAATGTCTTGGATCGTCTGGCTGAGCTCGTCAATGGTGATGCGCGAATGTCTCTTA
ACTATCTTGAGCTGCTGTATGACATGGCAGAAGACAATGCTCAGGGTGAAAAAGCGATCACGCTAAAGCTATTGGCGGAA
GTGGCGGGGGAGAAGGTCTCTCGTTTTGATAATAAAGGCGACATTTGGTACGACTTAATCTCTGCCGTGCACAAATCCAT
CCGTGGTTCCAATCCGGATGCTGCGCTTTATTGGGCGGCGAGAATGATCGCTGCCGGTTGTGATCCACTCTATATCGCGC
GACGTTTGCTGGCCATTGCCTCTGAAGATGTGGGCAATGCGGATCCGAGGGCAATGCAAGTGGCACTTTCCGCGTGGGAT
TGCTTTACCCGTGTTGGACCCGCAGAAGGCGAACGCGCAATTGCACAGGCGATCGTTTACCTTGCGTGCGCACCGAAAAG
TAATGCGGTTTACACCGCTTGGAAGCAAGCGCTGTCGGATGCGCATAATCTTCCAGAGTTTGAAGTGCCTTTCCATTTGC
GTAATGCACCGACCGGATTGATGAAAGATCTCGGTTATGGGGAAGGTTATCGATACGCTCATGATGAACCAGGGGCCTAC
GCCGCGGGCGAACAATATTTTCCTGCTGAAATTGCTGATCGCAAGTACTATCAGCCAACAAATCGAGGCTTAGAGAGCAA
AATCGCTGAAAAGTTAGATTACTTGGCTAATTTAGACGCAAATAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (54-159)

• MgsA AAA+ ATPase C terminal (MgsA_C) (269-435)

• AAA C-terminal domain (AAA_assoc_2) (189-268)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.953	94.209	0.376