Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6953_RS25800 Genome accession   NZ_CP027552
Coordinates   4786621..4787358 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2015C-4498     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4781621..4792358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6953_RS25785 clpC 4782075..4784648 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6953_RS25790 yfiH 4784778..4785509 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6953_RS25795 rluD 4785506..4786486 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6953_RS25800 comL 4786621..4787358 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6953_RS25810 raiA 4787630..4787971 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6953_RS25815 pheL 4788075..4788122 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6953_RS25820 pheA 4788220..4789380 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6953_RS25825 tyrA 4789423..4790544 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6953_RS25830 aroF 4790555..4791625 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6953_RS25835 yfiL 4791835..4792200 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=235692 C6953_RS25800 WP_000197686.1 4786621..4787358(+) (comL) [Escherichia coli strain 2015C-4498]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=235692 C6953_RS25800 WP_000197686.1 4786621..4787358(+) (comL) [Escherichia coli strain 2015C-4498]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376