Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   TRNA_RS29625 Genome accession   NC_006270
Coordinates   1598316..1598906 (+) Length   196 a.a.
NCBI ID   WP_003181328.1    Uniprot ID   A0A1Y0YEF8
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593316..1603906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS29595 (BL03590) - 1593621..1594073 (+) 453 WP_011197942.1 flavodoxin -
  TRNA_RS29600 (BL03591) dapD 1594179..1594889 (+) 711 WP_003181319.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  TRNA_RS29605 (BL05143) - 1594959..1596083 (+) 1125 WP_003181321.1 N-acetyldiaminopimelate deacetylase -
  TRNA_RS29610 (BL05144) - 1596146..1596391 (+) 246 WP_003181323.1 YkuS family protein -
  TRNA_RS29615 (BL05145) ahpA 1596686..1597228 (+) 543 WP_003181325.1 biofilm-specific peroxidase AhpA -
  TRNA_RS29620 (BL00560) - 1597310..1597768 (+) 459 WP_003181327.1 TlpA family protein disulfide reductase -
  TRNA_RS29625 (BL00559) rok 1598316..1598906 (+) 591 WP_003181328.1 transcriptional regulator Rok Regulator
  TRNA_RS29630 (BL00552) - 1599053..1600009 (-) 957 WP_009328583.1 hypothetical protein -
  TRNA_RS29635 (BL00558) mobA 1600162..1600749 (+) 588 WP_003181331.1 molybdenum cofactor guanylyltransferase -
  TRNA_RS29640 (BL00557) - 1600855..1601868 (+) 1014 WP_011197943.1 molybdopterin-synthase adenylyltransferase MoeB -
  TRNA_RS29645 (BL00556) glp 1601888..1603180 (+) 1293 WP_003181335.1 gephyrin-like molybdotransferase Glp -
  TRNA_RS29650 (BL00555) mobB 1603147..1603674 (+) 528 WP_003181336.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22665.62 Da        Isoelectric Point: 9.9960

>NTDB_id=23566 TRNA_RS29625 WP_003181328.1 1598316..1598906(+) (rok) [Bacillus licheniformis DSM 13 = ATCC 14580]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=23566 TRNA_RS29625 WP_003181328.1 1598316..1598906(+) (rok) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAACGAGGCTGAAGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAACATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACTGAATCTCTCCCTGTTTTAGCTGAATTGGCTGCACAGGAGATGAAGAGCTACCAGCAACAGCAG
CAACAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGA
TGGAACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAATTGCGTGAAGCGGCGATTAAAACAT
TAAAACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAAT
ATGACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGAGATTTCTACTGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YEF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.77

97.449

0.816

Multiple sequence alignment