Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CEG11_RS16790 Genome accession   NZ_CP021976
Coordinates   3364381..3365070 (-) Length   229 a.a.
NCBI ID   WP_088412330.1    Uniprot ID   -
Organism   Bacillus velezensis strain T20E-257     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3359381..3370070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG11_RS16755 (CEG11_16755) - 3359579..3360061 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CEG11_RS16760 (CEG11_16760) flgM 3360076..3360342 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CEG11_RS16765 (CEG11_16765) - 3360412..3360831 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  CEG11_RS16770 (CEG11_16770) comFC 3360905..3361594 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  CEG11_RS16775 (CEG11_16775) - 3361600..3361884 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  CEG11_RS16780 (CEG11_16780) comFA 3361942..3363327 (-) 1386 WP_003151388.1 DEAD/DEAH box helicase Machinery gene
  CEG11_RS16785 (CEG11_16785) - 3363435..3364283 (-) 849 WP_003151387.1 DegV family protein -
  CEG11_RS16790 (CEG11_16790) degU 3364381..3365070 (-) 690 WP_088412330.1 two-component system response regulator DegU Regulator
  CEG11_RS16795 (CEG11_16795) degS 3365147..3366310 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  CEG11_RS16800 (CEG11_16800) - 3366533..3367180 (+) 648 WP_003151384.1 YigZ family protein -
  CEG11_RS16805 (CEG11_16805) - 3367185..3368399 (+) 1215 WP_003151383.1 LCP family protein -
  CEG11_RS16810 (CEG11_16810) - 3368489..3369565 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25813.52 Da        Isoelectric Point: 5.7457

>NTDB_id=235528 CEG11_RS16790 WP_088412330.1 3364381..3365070(-) (degU) [Bacillus velezensis strain T20E-257]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNCGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=235528 CEG11_RS16790 WP_088412330.1 3364381..3365070(-) (degU) [Bacillus velezensis strain T20E-257]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACTGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment