Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CEG11_RS16780 Genome accession   NZ_CP021976
Coordinates   3361942..3363327 (-) Length   461 a.a.
NCBI ID   WP_003151388.1    Uniprot ID   -
Organism   Bacillus velezensis strain T20E-257     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3356942..3368327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG11_RS16745 (CEG11_16745) flgL 3357117..3358034 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  CEG11_RS16750 (CEG11_16750) flgK 3358046..3359563 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  CEG11_RS16755 (CEG11_16755) - 3359579..3360061 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CEG11_RS16760 (CEG11_16760) flgM 3360076..3360342 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CEG11_RS16765 (CEG11_16765) - 3360412..3360831 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  CEG11_RS16770 (CEG11_16770) comFC 3360905..3361594 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  CEG11_RS16775 (CEG11_16775) - 3361600..3361884 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  CEG11_RS16780 (CEG11_16780) comFA 3361942..3363327 (-) 1386 WP_003151388.1 DEAD/DEAH box helicase Machinery gene
  CEG11_RS16785 (CEG11_16785) - 3363435..3364283 (-) 849 WP_003151387.1 DegV family protein -
  CEG11_RS16790 (CEG11_16790) degU 3364381..3365070 (-) 690 WP_088412330.1 two-component system response regulator DegU Regulator
  CEG11_RS16795 (CEG11_16795) degS 3365147..3366310 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  CEG11_RS16800 (CEG11_16800) - 3366533..3367180 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52572.12 Da        Isoelectric Point: 10.1848

>NTDB_id=235527 CEG11_RS16780 WP_003151388.1 3361942..3363327(-) (comFA) [Bacillus velezensis strain T20E-257]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=235527 CEG11_RS16780 WP_003151388.1 3361942..3363327(-) (comFA) [Bacillus velezensis strain T20E-257]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment