Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJE04_RS01660 Genome accession   NC_005139
Coordinates   296776..297450 (+) Length   224 a.a.
NCBI ID   WP_011078895.1    Uniprot ID   Q7MPS7
Organism   Vibrio vulnificus YJ016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 291776..302450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS01640 (VV0281) - 291825..292763 (-) 939 WP_011149259.1 Kdo(2)-lipid IV(A) acyltransferase -
  BJE04_RS01645 (VV0282) slmA 292767..293357 (-) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  BJE04_RS01650 (VV0283) coaBC 293508..294713 (-) 1206 WP_013572552.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BJE04_RS01655 (VV0284) - 294995..296662 (+) 1668 WP_043877033.1 methyl-accepting chemotaxis protein -
  BJE04_RS01660 (VV0285) radC 296776..297450 (+) 675 WP_011078895.1 RadC family protein Machinery gene
  BJE04_RS01665 (VV0286) rpmB 297762..297998 (+) 237 WP_011078894.1 50S ribosomal protein L28 -
  BJE04_RS01670 (VV0287) rpmG 298014..298184 (+) 171 WP_011078893.1 50S ribosomal protein L33 -
  BJE04_RS01675 (VV0288) - 298431..298928 (+) 498 WP_011149262.1 hypothetical protein -
  BJE04_RS01680 (VV0289) mutM 298958..299767 (+) 810 WP_043877034.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BJE04_RS01685 (VV0291) - 299914..301890 (+) 1977 WP_011149265.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25340.02 Da        Isoelectric Point: 7.5165

>NTDB_id=23551 BJE04_RS01660 WP_011078895.1 296776..297450(+) (radC) [Vibrio vulnificus YJ016]
MSLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=23551 BJE04_RS01660 WP_011078895.1 296776..297450(+) (radC) [Vibrio vulnificus YJ016]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGAGAAAAATTGCTTCAGCGAGGGCCTCAATCTTTGTCTGATGC
CGAGTTGCTTGCGATCTTTTTACGAACAGGCACACAAGGAATGAACGTAATTGAACTCGCTGATTTTCTGTTGCGAGACT
TTGGTTCGCTGAGAAAACTCTTTTCTGCCGATGAACAGAGCTTTTGTCGTCACAAAGGATTGGGGCAGGCAAAGTACGTT
CAATTACAAGCTGTTTTAGAAATGACGCAACGTTATTTGGCCGAAACACTGCAACGTGGTGATGCGCTCACCAGTCCTCA
GCATACCAAGCTTTATCTCTCTTCCATGCTGCGCGATCGCCATCGAGAAGCGTTTTATGTGTTGTTCCTCGACAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCCTCGGTCTATCCTCGGGAAGTCGTTAAAAGA
GCCTTACACTATAATGCGGCCGCTTTAATATTGGCGCACAACCATCCCTCTGGAGTGGCAGAGCCAAGCCAAGCAGACCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTGGTGGGCGATGGGG
AAGTGGTTTCCTTTGCGGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(4-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MPS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.241

96.429

0.513
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.375

Multiple sequence alignment