Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   TRNA_RS23425 Genome accession   NC_006270
Coordinates   365113..365511 (-) Length   132 a.a.
NCBI ID   WP_003178808.1    Uniprot ID   -
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 360113..370511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS23400 (BL01817) - 360441..361124 (-) 684 WP_003178799.1 amino acid ABC transporter permease -
  TRNA_RS23405 (BL01818) - 361136..362011 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  TRNA_RS23410 (BL01716) - 362195..362746 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  TRNA_RS23415 (BL01717) - 362843..363568 (+) 726 WP_003178804.1 AAA family ATPase -
  TRNA_RS23420 (BL01718) - 363638..365074 (+) 1437 WP_011197532.1 glycoside hydrolase family 1 protein -
  TRNA_RS23425 (BL01819) nin/comJ 365113..365511 (-) 399 WP_003178808.1 competence protein ComJ Regulator
  TRNA_RS23430 (BL01820) nucA/comI 365529..365975 (-) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  TRNA_RS43795 (BL07081) - 366274..366444 (+) 171 WP_011197533.1 hypothetical protein -
  TRNA_RS23435 (BL01719) - 366450..367253 (+) 804 WP_009330243.1 serine/threonine protein kinase -
  TRNA_RS23440 (BL01821) - 367273..368882 (-) 1610 Protein_365 methyl-accepting chemotaxis protein -
  TRNA_RS23445 (BL01823) - 369073..369813 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14990.03 Da        Isoelectric Point: 5.6435

>NTDB_id=23544 TRNA_RS23425 WP_003178808.1 365113..365511(-) (nin/comJ) [Bacillus licheniformis DSM 13 = ATCC 14580]
MIKKWEAQEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTTGEHAVSFEALENTASSVEVRLNAQKQVPSFNRRVTVPF
EVLYDGVEIASVLSKKLTCDIPQGAYQLTCYTIMPDHSGTAQITYLLDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=23544 TRNA_RS23425 WP_003178808.1 365113..365511(-) (nin/comJ) [Bacillus licheniformis DSM 13 = ATCC 14580]
TTGATCAAAAAGTGGGAAGCACAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAGAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGATATACAACGGGAGAGCACGCGGTCTCGTTTGAAGCTCTCGAAA
ACACGGCATCTTCAGTAGAAGTCCGTTTGAATGCCCAAAAACAGGTGCCCTCCTTCAACAGGCGCGTCACCGTTCCTTTC
GAAGTGCTTTATGACGGGGTAGAAATTGCAAGCGTCCTATCCAAGAAATTGACATGCGATATTCCGCAAGGCGCCTATCA
GCTGACATGCTATACAATAATGCCTGATCACAGCGGCACTGCACAGATCACCTATCTTCTCGATTTTAAACAGGCTTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

50

96.97

0.485

Multiple sequence alignment