Detailed information NTG0235431

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: SE071780_RS05475
• Genome accession: NZ_CP021972
• Coordinates: 1105461..1106690 (+)
• Length: 409 a.a.
• NCBI ID: WP_012679520.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain ATCC 39506
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1100461..1111690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE071780_RS05450 (SE071780_01140)	-	1101188..1102471 (-)	1284	WP_042357442.1	hydroxymethylglutaryl-CoA reductase, degradative	-
SE071780_RS05455 (SE071780_01141)	-	1102458..1103633 (-)	1176	WP_012679517.1	hydroxymethylglutaryl-CoA synthase	-
SE071780_RS05460 (SE071780_01142)	-	1103818..1104657 (+)	840	WP_012679518.1	thymidylate synthase	-
SE071780_RS05465 (SE071780_01143)	-	1104738..1105235 (+)	498	WP_012679519.1	dihydrofolate reductase	-
SE071780_RS05470 (SE071780_01144)	-	1105255..1105425 (+)	171	WP_012515696.1	hypothetical protein	-
SE071780_RS05475 (SE071780_01145)	clpX	1105461..1106690 (+)	1230	WP_012679520.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
SE071780_RS05480 (SE071780_01146)	yihA	1106700..1107299 (+)	600	WP_012679521.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
SE071780_RS05485 (SE071780_01147)	-	1107663..1110665 (+)	3003	WP_012679522.1	leucine-rich repeat domain-containing protein	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45183.75 Da
• Isoelectric Point: 4.5726

>NTDB_id=235431 SE071780_RS05475 WP_012679520.1 1105461..1106690(+) (clpX) [Streptococcus equi subsp. equi strain ATCC 39506]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMVQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVIKVRITKEAVEG
QSKPILEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=235431 SE071780_RS05475 WP_012679520.1 1105461..1106690(+) (clpX) [Streptococcus equi subsp. equi strain ATCC 39506]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGTAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGATGATGATGATGT
GGATTTGCAGAAGTCCAATATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTGGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTCCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAGCGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCTATCACTCGTGACGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCACCGCAAGGTGGTCGTAAGCACCCAAACCAAGAGATGGTACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCCTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTATTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGGGCTCTGGAGGCTATTGCAGGTAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATTGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAATCAAGGTACGCATTACTAAGGAAGCTGTCGAAGGT
CAATCAAAGCCTATTTTAGAGATAGCCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.509	100	0.885
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.603	98.044	0.575