Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6993_RS14055 Genome accession   NZ_CP027546
Coordinates   2527269..2528006 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-4187     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2522269..2533006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6993_RS14040 clpC 2522723..2525296 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6993_RS14045 yfiH 2525426..2526157 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6993_RS14050 rluD 2526154..2527134 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6993_RS14055 comL 2527269..2528006 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6993_RS14065 raiA 2528277..2528618 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6993_RS14070 pheL 2528722..2528769 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6993_RS14075 pheA 2528868..2530028 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6993_RS14080 tyrA 2530071..2531192 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6993_RS14085 aroF 2531203..2532273 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6993_RS14090 yfiL 2532483..2532848 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=235410 C6993_RS14055 WP_000197686.1 2527269..2528006(+) (comL) [Escherichia coli strain 2013C-4187]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=235410 C6993_RS14055 WP_000197686.1 2527269..2528006(+) (comL) [Escherichia coli strain 2013C-4187]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376