Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SPS_RS09560 Genome accession   NC_004606
Coordinates   1878605..1879711 (+) Length   368 a.a.
NCBI ID   WP_011055115.1    Uniprot ID   P0DD85
Organism   Streptococcus pyogenes SSI-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1873605..1884711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPS_RS09540 (SPs1847) hasA 1874283..1875542 (+) 1260 WP_011055113.1 hyaluronan synthase HasA -
  SPS_RS09545 (SPs1848) hasB 1875578..1876786 (+) 1209 WP_011106927.1 UDP-glucose 6-dehydrogenase HasB -
  SPS_RS09550 (SPs1849) hasC 1876968..1877882 (+) 915 WP_002982024.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  SPS_RS09555 (SPs1850) yaaA 1878190..1878603 (+) 414 WP_011055114.1 S4 domain-containing protein YaaA -
  SPS_RS09560 (SPs1851) recF 1878605..1879711 (+) 1107 WP_011055115.1 DNA replication/repair protein RecF Machinery gene
  SPS_RS09565 (SPs1852) - 1879767..1880630 (-) 864 WP_002992310.1 GRP family sugar transporter -
  SPS_RS09570 (SPs1853) guaB 1880833..1882314 (-) 1482 WP_011055116.1 IMP dehydrogenase -
  SPS_RS09575 (SPs1854) trpS 1882622..1883644 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41807.71 Da        Isoelectric Point: 7.7896

>NTDB_id=23538 SPS_RS09560 WP_011055115.1 1878605..1879711(+) (recF) [Streptococcus pyogenes SSI-1]
MWIKELELKHYRNYDQLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSQRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=23538 SPS_RS09560 WP_011055115.1 1878605..1879711(+) (recF) [Streptococcus pyogenes SSI-1]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCAGCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGGAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCAGCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTGAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DD85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.187

100

0.459

Multiple sequence alignment