Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   S101392_RS08675 Genome accession   NZ_CP021921
Coordinates   1659070..1659963 (+) Length   297 a.a.
NCBI ID   WP_088325871.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1654070..1664963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS08655 (S101392_01716) - 1654755..1656470 (+) 1716 WP_088325869.1 hypothetical protein -
  S101392_RS08660 (S101392_01717) ylqH 1656467..1656748 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  S101392_RS08665 (S101392_01718) sucC 1656921..1658078 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  S101392_RS08670 (S101392_01719) sucD 1658107..1659009 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  S101392_RS08675 (S101392_01720) dprA 1659070..1659963 (+) 894 WP_088325871.1 DNA-processing protein DprA Machinery gene
  S101392_RS08680 (S101392_01721) topA 1660151..1662226 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  S101392_RS08685 (S101392_01722) trmFO 1662302..1663609 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  S101392_RS08690 (S101392_01723) xerC 1663677..1664591 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32934.32 Da        Isoelectric Point: 10.0764

>NTDB_id=234957 S101392_RS08675 WP_088325871.1 1659070..1659963(+) (dprA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MDQAAVCLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIKQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=234957 S101392_RS08675 WP_088325871.1 1659070..1659963(+) (dprA) [Bacillus subtilis subsp. subtilis strain SRCM101392]
TTGGATCAGGCCGCTGTCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAAAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGCACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

99.663

100

0.997
  dprA Legionella pneumophila strain ERS1305867

38.796

100

0.391
  dprA Lactococcus lactis subsp. cremoris KW2

41.729

89.562

0.374

Multiple sequence alignment