Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   S101392_RS02300 Genome accession   NZ_CP021921
Coordinates   442886..443836 (+) Length   316 a.a.
NCBI ID   WP_088325307.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437886..448836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS02275 (S101392_00448) rapC 439345..440493 (+) 1149 WP_088325305.1 response regulator aspartate phosphatase RapC Regulator
  S101392_RS02280 (S101392_00449) phrC 440477..440599 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  S101392_RS02285 yczM 440699..440788 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  S101392_RS02290 (S101392_00450) yczN 440870..440983 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  S101392_RS02295 (S101392_00451) thrD 441137..442501 (-) 1365 WP_088325306.1 aspartate kinase -
  S101392_RS02300 (S101392_00452) ceuB 442886..443836 (+) 951 WP_088325307.1 petrobactin ABC transporter permease YclN Machinery gene
  S101392_RS02305 (S101392_00453) yclO 443829..444776 (+) 948 WP_088325308.1 petrobactin ABC transporter permease YclO -
  S101392_RS02310 (S101392_00454) yclP 444770..445528 (+) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  S101392_RS02315 (S101392_00455) yclQ 445550..446503 (+) 954 WP_014478834.1 petrobactin ABC transporter substrate-binding protein YclQ -
  S101392_RS02320 (S101392_00456) cdaE 446550..447968 (-) 1419 WP_015382772.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.30 Da        Isoelectric Point: 9.9364

>NTDB_id=234935 S101392_RS02300 WP_088325307.1 442886..443836(+) (ceuB) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIIIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=234935 S101392_RS02300 WP_088325307.1 442886..443836(+) (ceuB) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTATCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTCTAATGCTCGGTAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCCCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCACTATTGGGAGCGGTTTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment