Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   S101392_RS02095 Genome accession   NZ_CP021921
Coordinates   382679..383128 (-) Length   149 a.a.
NCBI ID   WP_157677657.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 377679..388128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS02065 (S101392_00409) yckA 377955..378635 (-) 681 WP_024572176.1 amino acid ABC transporter permease -
  S101392_RS02070 (S101392_00410) yckB 378645..379508 (-) 864 WP_014478792.1 transporter substrate-binding domain-containing protein -
  S101392_RS21380 - 379670..379862 (+) 193 Protein_365 hypothetical protein -
  S101392_RS02075 - 379898..380218 (+) 321 Protein_366 RDD family protein -
  S101392_RS02080 (S101392_00411) yckD 380299..380631 (+) 333 WP_015252849.1 YckD family protein -
  S101392_RS02085 (S101392_00412) bglC 380784..382217 (+) 1434 WP_088325287.1 6-phospho-beta-glucosidase -
  S101392_RS02090 (S101392_00413) nin/comJ 382254..382652 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  S101392_RS02095 (S101392_00414) nucA/comI 382679..383128 (-) 450 WP_157677657.1 DNA-entry nuclease Machinery gene
  S101392_RS02100 (S101392_00415) tlpC 383296..385017 (-) 1722 WP_076458400.1 methyl-accepting chemotaxis protein TlpC -
  S101392_RS02105 (S101392_00416) hxlB 385128..385685 (-) 558 WP_088325288.1 6-phospho-3-hexuloisomerase -
  S101392_RS02110 (S101392_00417) hxlA 385691..386323 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  S101392_RS02115 (S101392_00418) hxlR 386557..386919 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16553.56 Da        Isoelectric Point: 4.6274

>NTDB_id=234932 S101392_RS02095 WP_157677657.1 382679..383128(-) (nucA/comI) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MNITTDIIKTILLVIVIIAAAAIGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKRYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=234932 S101392_RS02095 WP_157677657.1 382679..383128(-) (nucA/comI) [Bacillus subtilis subsp. subtilis strain SRCM101392]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTATCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGATCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGAGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment