Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   S101392_RS02090 Genome accession   NZ_CP021921
Coordinates   382254..382652 (-) Length   132 a.a.
NCBI ID   WP_015252845.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 377254..387652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS02065 (S101392_00409) yckA 377955..378635 (-) 681 WP_024572176.1 amino acid ABC transporter permease -
  S101392_RS02070 (S101392_00410) yckB 378645..379508 (-) 864 WP_014478792.1 transporter substrate-binding domain-containing protein -
  S101392_RS21380 - 379670..379862 (+) 193 Protein_365 hypothetical protein -
  S101392_RS02075 - 379898..380218 (+) 321 Protein_366 RDD family protein -
  S101392_RS02080 (S101392_00411) yckD 380299..380631 (+) 333 WP_015252849.1 YckD family protein -
  S101392_RS02085 (S101392_00412) bglC 380784..382217 (+) 1434 WP_088325287.1 6-phospho-beta-glucosidase -
  S101392_RS02090 (S101392_00413) nin/comJ 382254..382652 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  S101392_RS02095 (S101392_00414) nucA/comI 382679..383128 (-) 450 WP_157677657.1 DNA-entry nuclease Machinery gene
  S101392_RS02100 (S101392_00415) tlpC 383296..385017 (-) 1722 WP_076458400.1 methyl-accepting chemotaxis protein TlpC -
  S101392_RS02105 (S101392_00416) hxlB 385128..385685 (-) 558 WP_088325288.1 6-phospho-3-hexuloisomerase -
  S101392_RS02110 (S101392_00417) hxlA 385691..386323 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  S101392_RS02115 (S101392_00418) hxlR 386557..386919 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.86 Da        Isoelectric Point: 4.7078

>NTDB_id=234931 S101392_RS02090 WP_015252845.1 382254..382652(-) (nin/comJ) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYETKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=234931 S101392_RS02090 WP_015252845.1 382254..382652(-) (nin/comJ) [Bacillus subtilis subsp. subtilis strain SRCM101392]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAACAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985

Multiple sequence alignment