Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   S101395_RS09865 Genome accession   NZ_CP021920
Coordinates   1843337..1845067 (+) Length   576 a.a.
NCBI ID   WP_006637492.1    Uniprot ID   A0A7Y8V1C6
Organism   Bacillus sonorensis strain SRCM101395     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838337..1850067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS09840 (S101395_01997) - 1838613..1838873 (+) 261 WP_006637497.1 exodeoxyribonuclease VII small subunit -
  S101395_RS09845 (S101395_01998) - 1838863..1839753 (+) 891 WP_006637496.1 polyprenyl synthetase family protein -
  S101395_RS09850 (S101395_01999) dxs 1840008..1841909 (+) 1902 WP_006637495.1 1-deoxy-D-xylulose-5-phosphate synthase -
  S101395_RS09855 (S101395_02000) - 1841906..1842751 (+) 846 WP_006637494.1 TlyA family RNA methyltransferase -
  S101395_RS09860 (S101395_02001) ahrC 1842858..1843307 (+) 450 WP_006637493.1 transcriptional regulator AhrC/ArgR -
  S101395_RS09865 (S101395_02002) recN 1843337..1845067 (+) 1731 WP_006637492.1 DNA repair protein RecN Machinery gene
  S101395_RS09870 (S101395_02003) spoIVB 1845248..1846564 (+) 1317 WP_051056677.1 SpoIVB peptidase -
  S101395_RS09880 (S101395_02004) spo0A 1846854..1847654 (+) 801 WP_006637490.1 sporulation transcription factor Spo0A Regulator
  S101395_RS09885 (S101395_02005) - 1847738..1848049 (-) 312 WP_006637489.1 hypothetical protein -
  S101395_RS09890 (S101395_02006) - 1848061..1849500 (-) 1440 WP_006637488.1 hypothetical protein -
  S101395_RS09895 (S101395_02007) - 1849551..1849895 (+) 345 WP_006637487.1 DUF1433 domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64331.17 Da        Isoelectric Point: 4.8195

>NTDB_id=234891 S101395_RS09865 WP_006637492.1 1843337..1845067(+) (recN) [Bacillus sonorensis strain SRCM101395]
MLAELSIKNFAIIEELTISFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
GELGIDASDEMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDDHHLQLLDRYAGEEIEKALK
AYQEVYSCYMNVMKKVKQLSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLEEERRQISNFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINDGLKKISESVANAYYILEDSTFQIRNMLDDLEYDPARLDFIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIQNRDSHLQALKEELESVGKDVAIEAMNVSDIRKSWAKKLANQIQQELKELYMGKSTFDTEFQL
KTADAREEAPVVNGTPVHLTKQGIDSVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKISEIGRMIAGVEVTDLTKR
HAKELLHQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=234891 S101395_RS09865 WP_006637492.1 1843337..1845067(+) (recN) [Bacillus sonorensis strain SRCM101395]
TTGTTAGCTGAATTATCGATTAAGAACTTTGCGATTATCGAAGAACTAACCATTTCTTTTGAAAAAGGGCTGACGGTGTT
AACCGGCGAAACCGGGGCCGGAAAATCGATCATCATCGATGCCATCTCTTTGCTTGTGGGCGGAAGAGGTTCATCCGAAT
ATGTCAGATATGGAGAAAAAAGAGCCGAATTAGAAGGGCTTTTTCTGCTGGACAGCGGGCATCCGGTCTTCGATCTGTGC
GGAGAGCTTGGCATCGACGCTTCTGACGAGATGATCGTCATGAGACGGGATATCAATGCAAACGGCAAAAGCATCTGCCG
TGTAAATGGCAAGCTTGTGACGATTGCCGCTTTGCGGGAGGTCGGCAGGCTTCTGCTTGATATCCACGGTCAGCACGATA
ACCAGCTGCTAATGGAAGACGACCATCATCTTCAGCTTTTGGACCGGTACGCCGGCGAGGAAATCGAAAAAGCGCTGAAA
GCCTACCAGGAAGTTTACAGCTGCTATATGAACGTCATGAAAAAGGTGAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACAGACTTGATTTGATTCAGTTTCAGCTTGATGAAATCGAATCCGCAAACCTCGAGCCCAAAGAGGACGAGCTTTTGG
AGGAAGAGCGCCGGCAGATTTCAAACTTTGAGAAAATATATGAAGCTTTGCAAAATGCCTATAACGCGCTTCGCAACGAA
CAGGCCGGACTCGATTGGGTCGGGATGGCATCAAGCGAGCTGGAGAATGTCTCCGGCATCAATGACGGACTGAAAAAGAT
ATCTGAATCTGTTGCCAACGCTTACTATATTTTGGAGGATTCAACCTTTCAAATCAGAAACATGCTGGACGACTTGGAAT
ACGATCCGGCACGGCTCGATTTCATTGAATCCAGATTGAACGAAATCAAACAATTGAAGCGAAAATACGGCGCCACTGTT
GAAGATATACAGGCATATTCCGCGAAAATCGAGGAAGAAATCGATCGTATCCAAAACCGTGACAGCCATCTGCAGGCATT
AAAAGAGGAGCTCGAATCAGTCGGCAAAGATGTCGCGATCGAAGCGATGAATGTGTCAGATATCCGAAAATCATGGGCGA
AAAAACTTGCCAACCAGATTCAGCAGGAACTAAAAGAGCTCTATATGGGAAAATCGACGTTCGATACCGAATTCCAACTG
AAAACGGCAGATGCCCGCGAAGAAGCACCTGTCGTGAACGGAACCCCTGTTCATCTGACAAAGCAGGGGATTGACAGCGT
CCGCTTTTTAATTTCGACCAATACCGGCGAACCGCTGAAATCCTTGTCAAAAGTCGCTTCAGGCGGCGAATTGTCAAGAA
TTATGCTGGCGATGAAAAGCATTTTCTCCGCGCAGCAGGACGTCACATCGATCATTTTTGACGAAGTGGACACCGGGGTG
AGCGGGAGAGTGGCGCAGGCGATCGCCGAGAAAATCCACCGCGTATCGATCGGCTCCCAAGTGCTGTGCATCACCCATTT
GCCGCAAGTAGCGGCAATGGCGGACACGCATCTTTTAATTACAAAACAGTCCAAGGACGGACGAACGACAACAAGCGTCA
CACCATTGTCAAAACAGGAAAAAATATCGGAAATCGGCCGGATGATTGCCGGCGTCGAAGTGACAGATCTGACGAAGCGC
CATGCAAAGGAGCTTTTGCATCAGGCCAAACTCGTCAAAACCACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8V1C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.076

100

0.811

Multiple sequence alignment