Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | S101395_RS09680 | Genome accession | NZ_CP021920 |
| Coordinates | 1812307..1812642 (-) | Length | 111 a.a. |
| NCBI ID | WP_006637528.1 | Uniprot ID | - |
| Organism | Bacillus sonorensis strain SRCM101395 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1807307..1817642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S101395_RS09635 (S101395_01956) | comGD | 1807517..1807960 (+) | 444 | WP_006637537.1 | competence type IV pilus minor pilin ComGD | - |
| S101395_RS09640 (S101395_01957) | comGE | 1807944..1808291 (+) | 348 | WP_006637536.1 | competence type IV pilus minor pilin ComGE | - |
| S101395_RS09645 (S101395_01958) | comGF | 1808200..1808691 (+) | 492 | WP_224254419.1 | competence type IV pilus minor pilin ComGF | - |
| S101395_RS09650 (S101395_01959) | comGG | 1808746..1809069 (+) | 324 | WP_224254418.1 | competence type IV pilus minor pilin ComGG | - |
| S101395_RS09655 (S101395_01960) | - | 1809149..1809334 (+) | 186 | WP_006637533.1 | YqzE family protein | - |
| S101395_RS09660 (S101395_01961) | - | 1809428..1809748 (-) | 321 | WP_006637532.1 | DUF3889 domain-containing protein | - |
| S101395_RS09665 (S101395_01962) | tapA | 1810011..1810757 (+) | 747 | WP_006637531.1 | amyloid fiber anchoring/assembly protein TapA | - |
| S101395_RS09670 (S101395_01963) | sipW | 1810754..1811335 (+) | 582 | WP_006637530.1 | signal peptidase I SipW | - |
| S101395_RS09675 (S101395_01964) | tasA | 1811405..1812199 (+) | 795 | WP_006637529.1 | biofilm matrix protein TasA | - |
| S101395_RS09680 (S101395_01965) | sinR | 1812307..1812642 (-) | 336 | WP_006637528.1 | transcriptional regulator SinR | Regulator |
| S101395_RS09685 (S101395_01966) | sinI | 1812676..1812849 (-) | 174 | WP_006637527.1 | anti-repressor SinI | Regulator |
| S101395_RS09690 (S101395_01967) | - | 1813039..1813833 (-) | 795 | WP_006637526.1 | YqhG family protein | - |
| S101395_RS09695 (S101395_01968) | - | 1813837..1815516 (-) | 1680 | WP_006637525.1 | DEAD/DEAH box helicase | - |
| S101395_RS09700 (S101395_01969) | gcvT | 1816103..1817197 (+) | 1095 | WP_006637524.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12963.59 Da Isoelectric Point: 5.9495
>NTDB_id=234889 S101395_RS09680 WP_006637528.1 1812307..1812642(-) (sinR) [Bacillus sonorensis strain SRCM101395]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=234889 S101395_RS09680 WP_006637528.1 1812307..1812642(-) (sinR) [Bacillus sonorensis strain SRCM101395]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAATTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTTGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCGATGGCATCAGGGGTTTCTAAAAAACAATTTCGCGAATTTTTGGATTATCAAAAATGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAATTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTTGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCGATGGCATCAGGGGTTTCTAAAAAACAATTTCGCGAATTTTTGGATTATCAAAAATGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |