Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CDO84_RS11150 Genome accession   NZ_CP021911
Coordinates   2248856..2250586 (-) Length   576 a.a.
NCBI ID   WP_040082671.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2243856..2255586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS21400 - 2244440..2244592 (+) 153 WP_156122887.1 hypothetical protein -
  CDO84_RS11125 (CDO84_11125) - 2244665..2245783 (+) 1119 WP_040082672.1 NADH-dependent flavin oxidoreductase -
  CDO84_RS11130 (CDO84_11130) - 2245997..2246176 (-) 180 WP_014664554.1 hypothetical protein -
  CDO84_RS11135 (CDO84_11135) spo0A 2246322..2247125 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  CDO84_RS11145 (CDO84_11145) spoIVB 2247401..2248681 (-) 1281 WP_014664555.1 SpoIVB peptidase -
  CDO84_RS11150 (CDO84_11150) recN 2248856..2250586 (-) 1731 WP_040082671.1 DNA repair protein RecN Machinery gene
  CDO84_RS11155 (CDO84_11155) argR 2250623..2251072 (-) 450 WP_003230265.1 arginine repressor ArgR -
  CDO84_RS11160 (CDO84_11160) - 2251169..2252014 (-) 846 WP_040082669.1 TlyA family RNA methyltransferase -
  CDO84_RS11165 (CDO84_11165) dxs 2252011..2253912 (-) 1902 WP_040082667.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CDO84_RS11170 (CDO84_11170) - 2254088..2254978 (-) 891 WP_014664560.1 farnesyl diphosphate synthase -
  CDO84_RS11175 (CDO84_11175) - 2254968..2255222 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64593.36 Da        Isoelectric Point: 4.7370

>NTDB_id=234799 CDO84_RS11150 WP_040082671.1 2248856..2250586(-) (recN) [Bacillus sp. MD-5]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYTKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLEINEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QSGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKI
RQASRNEESPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKIVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=234799 CDO84_RS11150 WP_040082671.1 2248856..2250586(-) (recN) [Bacillus sp. MD-5]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATTATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCGAAAGCAGAACTTGAAGGGCTGTTTCTTTTGGAGAGCGGCCATCCCGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGAGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTCTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGCGCGCTACAA
GCGTATCAGGAAGGGTACCAGCGGTATACGAAGCTGCTCAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGCCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCAGCAAAGCTTGAGATCAACGAAGATGAACAGCTTC
AAGAAGAGCGTCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAATGCGCTTCGCAGTGAA
CAGAGCGGATTGGACTGGGTCGGAATGGCATCAGCCCAGCTTGAAGATATATCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAGAGTGTTTCGAACTCCTACTATCTGCTTGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGATCCGGAACGCCTGAACTATATTGAGACGCGGCTCAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTC
GAGGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAAATTGACCAAATTGAAAACAGGGACAGCCACCTACAAAGCCT
GAAAAAGGAGCTTGACTCCGTTGGCAAGGATGTCGCAGTGGAAGCGGCAAATGTTTCTCAAATCCGGAAAACATGGGCGA
AAAAACTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACGTTTGATACGGAATTCAAAATC
AGACAAGCGTCACGCAATGAAGAGTCACCGGTTGTAAACGGCCAGCCTGTTCAGCTGACTGAACAAGGGATCGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCTCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAGCAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTTTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTTTCTAAGCAGGAAAAAATAGTGGAAATCGGACGCATGATTGCAGGTGTCGAGGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.743

100

0.977

Multiple sequence alignment