Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CDO84_RS11135 Genome accession   NZ_CP021911
Coordinates   2246322..2247125 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2241322..2252125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS11110 (CDO84_11110) - 2242387..2243118 (-) 732 WP_040082675.1 glycerophosphodiester phosphodiesterase -
  CDO84_RS11115 (CDO84_11115) - 2243196..2243816 (-) 621 WP_082032986.1 N-acetylmuramoyl-L-alanine amidase -
  CDO84_RS11120 (CDO84_11120) - 2243836..2244132 (-) 297 WP_040083767.1 hypothetical protein -
  CDO84_RS21400 - 2244440..2244592 (+) 153 WP_156122887.1 hypothetical protein -
  CDO84_RS11125 (CDO84_11125) - 2244665..2245783 (+) 1119 WP_040082672.1 NADH-dependent flavin oxidoreductase -
  CDO84_RS11130 (CDO84_11130) - 2245997..2246176 (-) 180 WP_014664554.1 hypothetical protein -
  CDO84_RS11135 (CDO84_11135) spo0A 2246322..2247125 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  CDO84_RS11145 (CDO84_11145) spoIVB 2247401..2248681 (-) 1281 WP_014664555.1 SpoIVB peptidase -
  CDO84_RS11150 (CDO84_11150) recN 2248856..2250586 (-) 1731 WP_040082671.1 DNA repair protein RecN Machinery gene
  CDO84_RS11155 (CDO84_11155) argR 2250623..2251072 (-) 450 WP_003230265.1 arginine repressor ArgR -
  CDO84_RS11160 (CDO84_11160) - 2251169..2252014 (-) 846 WP_040082669.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=234798 CDO84_RS11135 WP_003226427.1 2246322..2247125(-) (spo0A) [Bacillus sp. MD-5]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=234798 CDO84_RS11135 WP_003226427.1 2246322..2247125(-) (spo0A) [Bacillus sp. MD-5]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATCATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTTGGTCATATCCGCCAAGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGTGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAACTCAGAGTTCATTGCGATGGTTGCGGATAAGCTTAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment