Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CDO84_RS07695 Genome accession   NZ_CP021911
Coordinates   1530305..1531198 (+) Length   297 a.a.
NCBI ID   WP_040083179.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1525305..1536198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS07675 (CDO84_07675) - 1525977..1527704 (+) 1728 WP_040083181.1 hypothetical protein -
  CDO84_RS07680 (CDO84_07680) - 1527701..1527982 (+) 282 WP_040083180.1 FlhB-like flagellar biosynthesis protein -
  CDO84_RS07685 (CDO84_07685) sucC 1528157..1529314 (+) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  CDO84_RS07690 (CDO84_07690) sucD 1529343..1530245 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  CDO84_RS07695 (CDO84_07695) dprA 1530305..1531198 (+) 894 WP_040083179.1 DNA-processing protein DprA Machinery gene
  CDO84_RS07700 (CDO84_07700) topA 1531386..1533461 (+) 2076 WP_014663959.1 type I DNA topoisomerase -
  CDO84_RS07705 (CDO84_07705) trmFO 1533537..1534844 (+) 1308 WP_014663960.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CDO84_RS07710 (CDO84_07710) xerC 1534912..1535826 (+) 915 WP_040083178.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33051.35 Da        Isoelectric Point: 9.9461

>NTDB_id=234792 CDO84_RS07695 WP_040083179.1 1530305..1531198(+) (dprA) [Bacillus sp. MD-5]
MDQAAACLTTCRINQLLSPSLLLKWWKADPSMSLTSSVLQTVTRDKMKAAALKKKIEEFYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTEEFCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADYMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIRSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=234792 CDO84_RS07695 WP_040083179.1 1530305..1531198(+) (dprA) [Bacillus sp. MD-5]
TTGGATCAGGCCGCTGCCTGCTTAACGACTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCATCGGTGTTACAAACGGTTACTCGTGATAAAATGAAAGCAGCTGCATTAAAAA
AGAAAATAGAAGAATTTTACCCAAAGCTCCAACGCGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATTCCTATC
TCTTCAAAGCAATATCCTTTCTGGCTTAAAACCATTTATGATCCCCCCGCCGTTCTGTTTGCAAAGGGTGATATGACTCT
TCTTTCGAAAGGAAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTACGGGAAACAAGTTGTCAATCATCTTA
CAGAAGAGTTCTGCCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGGGAAAACCTTCAATTAGC
AGATTACATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGACTGAGTGAAGGTGTTATTGTCGTACAGGGCAAGGAAAAAAGCGGTTCGCTGATAACTGCC
TATCAAGCATTGGAGCAAGGTAGAGAAGTGTTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATAAGGTCAGCAGAGGATATTTTCGAGGAGCTTCCCGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

94.949

100

0.949
  dprA Lactococcus lactis subsp. cremoris KW2

39.493

92.929

0.367
  dprA Legionella pneumophila strain ERS1305867

38.214

94.276

0.36

Multiple sequence alignment