Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CD795_RS02610 Genome accession   NZ_CP021907
Coordinates   538424..538993 (+) Length   189 a.a.
NCBI ID   WP_000872867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Seattle 1945 isolate G478     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 533424..543993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD795_RS02585 cysE 534637..535284 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  CD795_RS02590 cysS 535268..536668 (+) 1401 WP_000631982.1 cysteine--tRNA ligase -
  CD795_RS02595 - 536661..537065 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  CD795_RS02600 rlmB 537073..537819 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CD795_RS02605 - 537819..538343 (+) 525 WP_000664740.1 NYN domain-containing protein -
  CD795_RS02610 sigH 538424..538993 (+) 570 WP_000872867.1 sigma-70 family RNA polymerase sigma factor Regulator
  CD795_RS02615 rpmG 539108..539251 (+) 144 WP_001791441.1 50S ribosomal protein L33 -
  CD795_RS02620 secE 539307..539489 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  CD795_RS02625 nusG 539502..540050 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  CD795_RS02630 rplK 540231..540653 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  CD795_RS02635 rplA 540861..541553 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  CD795_RS02645 rplJ 541825..542325 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  CD795_RS02650 rplL 542368..542736 (+) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  CD795_RS02655 - 542911..543519 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=234706 CD795_RS02610 WP_000872867.1 538424..538993(+) (sigH) [Staphylococcus aureus strain Seattle 1945 isolate G478]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=234706 CD795_RS02610 WP_000872867.1 538424..538993(+) (sigH) [Staphylococcus aureus strain Seattle 1945 isolate G478]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment