Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CD017_RS10900 Genome accession   NZ_CP021905
Coordinates   2132884..2133279 (-) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain Seattle 1945 isolate G477     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2127884..2138279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD017_RS10870 thiE 2128345..2128986 (-) 642 WP_000483150.1 thiamine phosphate synthase -
  CD017_RS10875 thiM 2128988..2129779 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  CD017_RS10880 thiD 2129763..2130593 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CD017_RS10885 tenA 2130586..2131275 (-) 690 WP_000396068.1 thiaminase II -
  CD017_RS10895 sceD 2131800..2132495 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  CD017_RS10900 ssb 2132884..2133279 (-) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  CD017_RS10905 - 2133473..2133913 (+) 441 WP_000846746.1 YwpF-like family protein -
  CD017_RS10910 fabZ 2133970..2134410 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CD017_RS10915 murA 2134444..2135709 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CD017_RS10920 - 2135820..2136053 (-) 234 WP_000384523.1 DUF1146 family protein -
  CD017_RS10925 - 2136932..2137336 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=234696 CD017_RS10900 WP_000932696.1 2132884..2133279(-) (ssb) [Staphylococcus aureus strain Seattle 1945 isolate G477]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=234696 CD017_RS10900 WP_000932696.1 2132884..2133279(-) (ssb) [Staphylococcus aureus strain Seattle 1945 isolate G477]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment