Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CD017_RS04615 Genome accession   NZ_CP021905
Coordinates   938206..939192 (+) Length   328 a.a.
NCBI ID   WP_000959276.1    Uniprot ID   A0AAJ4YXL4
Organism   Staphylococcus aureus strain Seattle 1945 isolate G477     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 933206..944192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD017_RS04595 - 933643..935289 (+) 1647 WP_038412973.1 IS1182-like element ISSau3 family transposase -
  CD017_RS04600 trpS 935316..936305 (-) 990 WP_000448930.1 tryptophan--tRNA ligase -
  CD017_RS04605 spxA 936600..936995 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  CD017_RS04610 mecA 937366..938085 (+) 720 WP_001217728.1 adaptor protein MecA -
  CD017_RS04615 coiA 938206..939192 (+) 987 WP_000959276.1 competence protein CoiA Machinery gene
  CD017_RS04620 pepF 939240..941048 (+) 1809 WP_000082722.1 oligoendopeptidase F -
  CD017_RS04625 yjbH 941508..942314 (-) 807 WP_000896691.1 protease adaptor protein YjbH -
  CD017_RS04630 - 942337..942702 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  CD017_RS04635 - 942806..943399 (-) 594 WP_000224620.1 CYTH domain-containing protein -
  CD017_RS04640 - 943585..943932 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38741.30 Da        Isoelectric Point: 9.6486

>NTDB_id=234670 CD017_RS04615 WP_000959276.1 938206..939192(+) (coiA) [Staphylococcus aureus strain Seattle 1945 isolate G477]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=234670 CD017_RS04615 WP_000959276.1 938206..939192(+) (coiA) [Staphylococcus aureus strain Seattle 1945 isolate G477]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.951

100

0.97
  coiA Staphylococcus aureus N315

96.951

100

0.97

Multiple sequence alignment