Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6W78_RS15960 Genome accession   NZ_CP027461
Coordinates   3037394..3038131 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 95-3322     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3032394..3043131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W78_RS15945 clpC 3032848..3035421 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6W78_RS15950 yfiH 3035551..3036282 (-) 732 WP_000040147.1 purine nucleoside phosphorylase YfiH -
  C6W78_RS15955 rluD 3036279..3037259 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6W78_RS15960 comL 3037394..3038131 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6W78_RS15970 raiA 3038401..3038742 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6W78_RS15975 pheL 3038846..3038893 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6W78_RS15980 pheA 3038991..3040151 (+) 1161 WP_042021047.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6W78_RS15985 tyrA 3040194..3041315 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6W78_RS15990 aroF 3041326..3042396 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6W78_RS15995 yfiL 3042610..3042975 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=234645 C6W78_RS15960 WP_000197686.1 3037394..3038131(+) (comL) [Escherichia coli strain 95-3322]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=234645 C6W78_RS15960 WP_000197686.1 3037394..3038131(+) (comL) [Escherichia coli strain 95-3322]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376