Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CD007_RS17970 Genome accession   NZ_CP021903
Coordinates   3483312..3484001 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain ge28     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3478312..3489001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS17935 (CD007_17935) flgN 3478492..3478974 (-) 483 WP_014481048.1 flagellar protein FlgN -
  CD007_RS17940 (CD007_17940) flgM 3478990..3479256 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  CD007_RS17945 (CD007_17945) yvyF 3479337..3479756 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  CD007_RS17950 (CD007_17950) comFC 3479830..3480552 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  CD007_RS17955 (CD007_17955) comFB 3480516..3480812 (-) 297 WP_003227989.1 late competence protein ComFB -
  CD007_RS17960 (CD007_17960) comFA 3480872..3482263 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  CD007_RS17965 (CD007_17965) fakBA 3482369..3483214 (-) 846 WP_003227986.1 DegV family protein -
  CD007_RS17970 (CD007_17970) degU 3483312..3484001 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CD007_RS17975 (CD007_17975) degS 3484084..3485241 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  CD007_RS17980 (CD007_17980) yvyE 3485458..3486111 (+) 654 WP_003227979.1 YigZ family protein -
  CD007_RS17985 (CD007_17985) tagV 3486111..3487295 (+) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  CD007_RS17990 (CD007_17990) tagO 3487368..3488444 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=234642 CD007_RS17970 WP_003219701.1 3483312..3484001(-) (degU) [Bacillus subtilis strain ge28]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=234642 CD007_RS17970 WP_003219701.1 3483312..3484001(-) (degU) [Bacillus subtilis strain ge28]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment