Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CD007_RS17950 Genome accession   NZ_CP021903
Coordinates   3479830..3480552 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3474830..3485552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS17915 (CD007_17915) fliW 3474969..3475400 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  CD007_RS17920 (CD007_17920) yviE 3475421..3475996 (-) 576 WP_041850476.1 DUF6470 family protein -
  CD007_RS17925 (CD007_17925) flgL 3476043..3476939 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  CD007_RS17930 (CD007_17930) flgK 3476950..3478473 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  CD007_RS17935 (CD007_17935) flgN 3478492..3478974 (-) 483 WP_014481048.1 flagellar protein FlgN -
  CD007_RS17940 (CD007_17940) flgM 3478990..3479256 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  CD007_RS17945 (CD007_17945) yvyF 3479337..3479756 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  CD007_RS17950 (CD007_17950) comFC 3479830..3480552 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  CD007_RS17955 (CD007_17955) comFB 3480516..3480812 (-) 297 WP_003227989.1 late competence protein ComFB -
  CD007_RS17960 (CD007_17960) comFA 3480872..3482263 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  CD007_RS17965 (CD007_17965) fakBA 3482369..3483214 (-) 846 WP_003227986.1 DegV family protein -
  CD007_RS17970 (CD007_17970) degU 3483312..3484001 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CD007_RS17975 (CD007_17975) degS 3484084..3485241 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=234640 CD007_RS17950 WP_014481051.1 3479830..3480552(-) (comFC) [Bacillus subtilis strain ge28]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=234640 CD007_RS17950 WP_014481051.1 3479830..3480552(-) (comFC) [Bacillus subtilis strain ge28]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment