Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CD007_RS15975 Genome accession   NZ_CP021903
Coordinates   3084351..3084995 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3079351..3089995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS15940 (CD007_15940) mrpB 3080543..3080974 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  CD007_RS15945 (CD007_15945) mrpC 3080974..3081315 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  CD007_RS15950 (CD007_15950) mrpD 3081308..3082789 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  CD007_RS15955 (CD007_15955) mrpE 3082795..3083271 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  CD007_RS15960 (CD007_15960) mrpF 3083271..3083555 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  CD007_RS15965 (CD007_15965) mnhG 3083539..3083913 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  CD007_RS15970 (CD007_15970) yuxO 3083952..3084332 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  CD007_RS15975 (CD007_15975) comA 3084351..3084995 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  CD007_RS15980 (CD007_15980) comP 3085076..3087376 (-) 2301 WP_088300729.1 histidine kinase Regulator
  CD007_RS15985 (CD007_15985) pdeH 3087454..3088011 (-) 558 Protein_3091 cyclic di-GMP phosphodiesterase -
  CD007_RS15990 (CD007_15990) pncB 3088148..3089620 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=234636 CD007_RS15975 WP_003220716.1 3084351..3084995(-) (comA) [Bacillus subtilis strain ge28]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=234636 CD007_RS15975 WP_003220716.1 3084351..3084995(-) (comA) [Bacillus subtilis strain ge28]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment