Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6W79_RS15685 Genome accession   NZ_CP027457
Coordinates   3125827..3126564 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 88-3493     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3120827..3131564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W79_RS15650 - 3121024..3121344 (-) 321 WP_106888511.1 DUF2799 domain-containing protein -
  C6W79_RS15655 aroF 3121554..3122624 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6W79_RS15660 tyrA 3122635..3123756 (+) 1122 WP_001613624.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6W79_RS15665 pheA 3123799..3124959 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6W79_RS15670 pheL 3125058..3125105 (-) 48 WP_010723158.1 phe operon leader peptide -
  C6W79_RS15675 raiA 3125209..3125550 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6W79_RS15685 comL 3125827..3126564 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6W79_RS15690 rluD 3126699..3127679 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6W79_RS15695 yfiH 3127676..3128407 (+) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  C6W79_RS15700 clpC 3128537..3131110 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=234511 C6W79_RS15685 WP_000197686.1 3125827..3126564(-) (comL) [Escherichia coli strain 88-3493]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=234511 C6W79_RS15685 WP_000197686.1 3125827..3126564(-) (comL) [Escherichia coli strain 88-3493]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376