Detailed information NTG0234507

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6W79_RS14835
• Genome accession: NZ_CP027457
• Coordinates: 2976790..2977782 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 88-3493
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2971790..2982782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6W79_RS14805	ispD	2971851..2972561 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6W79_RS14810	ispF	2972561..2973040 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6W79_RS14815	truD	2973037..2974086 (+)	1050	WP_000568962.1	tRNA pseudouridine(13) synthase TruD	-
C6W79_RS14820	surE	2974067..2974828 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6W79_RS14825	pcm	2974822..2975448 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6W79_RS14830	nlpD	2975633..2976727 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C6W79_RS14835	rpoS	2976790..2977782 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6W79_RS14840	-	2977902..2978309 (-)	408	WP_001613692.1	MarR family transcriptional regulator	-
C6W79_RS14845	-	2978456..2979049 (+)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6W79_RS14850	-	2979049..2980476 (+)	1428	WP_001613690.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6W79_RS14855	-	2980487..2980723 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6W79_RS14860	ygbN	2980762..2982126 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=234507 C6W79_RS14835 WP_000081550.1 2976790..2977782(+) (rpoS) [Escherichia coli strain 88-3493]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=234507 C6W79_RS14835 WP_000081550.1 2976790..2977782(+) (rpoS) [Escherichia coli strain 88-3493]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715