Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6W74_RS24350 Genome accession   NZ_CP027454
Coordinates   4594852..4595589 (+) Length   245 a.a.
NCBI ID   WP_000197674.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-4423     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4589852..4600589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W74_RS24335 clpC 4590306..4592879 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6W74_RS24340 yfiH 4593009..4593740 (-) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  C6W74_RS24345 rluD 4593737..4594717 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6W74_RS24350 comL 4594852..4595589 (+) 738 WP_000197674.1 outer membrane protein assembly factor BamD Machinery gene
  C6W74_RS24360 raiA 4595860..4596201 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6W74_RS24365 pheL 4596305..4596352 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6W74_RS24370 pheA 4596451..4597611 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6W74_RS24375 tyrA 4597654..4598775 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6W74_RS24380 aroF 4598786..4599856 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6W74_RS24385 yfiL 4600065..4600430 (+) 366 WP_001370532.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27825.41 Da        Isoelectric Point: 6.4874

>NTDB_id=234439 C6W74_RS24350 WP_000197674.1 4594852..4595589(+) (comL) [Escherichia coli strain 2014C-4423]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
PDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=234439 C6W74_RS24350 WP_000197674.1 4594852..4595589(+) (comL) [Escherichia coli strain 2014C-4423]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
CCCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376