Detailed information NTG0234416

Bioinformatically predicted

Overview

• Name: kpsS
• Type: Regulator
• Locus tag: CDV25_RS09375
• Genome accession: NZ_CP021886
• Coordinates: 1890138..1891319 (-)
• Length: 393 a.a.
• NCBI ID: WP_108911706.1
• Uniprot ID: A0A2U8FFL1
• Organism: Helicobacter apodemus strain SCJK1
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1885138..1896319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDV25_RS09355 (CDV25_09315)	-	1886266..1887399 (+)	1134	WP_108911702.1	hypothetical protein	-
CDV25_RS09360 (CDV25_09320)	-	1887392..1888765 (+)	1374	WP_108911703.1	cytochrome P450	-
CDV25_RS09365 (CDV25_09325)	-	1888773..1889126 (+)	354	WP_108911704.1	hypothetical protein	-
CDV25_RS09370 (CDV25_09330)	galE	1889136..1890146 (+)	1011	WP_108911705.1	UDP-glucose 4-epimerase GalE	-
CDV25_RS09375 (CDV25_09335)	kpsS	1890138..1891319 (-)	1182	WP_108911706.1	capsular biosynthesis protein	Regulator
CDV25_RS09380 (CDV25_09340)	-	1891382..1893115 (-)	1734	WP_108911707.1	SLBB domain-containing protein	-
CDV25_RS09385 (CDV25_09345)	-	1893115..1894245 (-)	1131	WP_108911708.1	capsule biosynthesis protein	-
CDV25_RS09390 (CDV25_09350)	-	1894246..1894905 (-)	660	WP_034554886.1	ABC transporter ATP-binding protein	-
CDV25_RS09395 (CDV25_09355)	-	1894902..1895666 (-)	765	WP_034554887.1	ABC transporter permease	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 46684.42 Da
• Isoelectric Point: 10.2338

>NTDB_id=234416 CDV25_RS09375 WP_108911706.1 1890138..1891319(-) (kpsS) [Helicobacter apodemus strain SCJK1]
MQLDNIIKKFQSQNILLLQGPVGPFFYSLSKKLKEQDCKVYKINFNGGDFLFYPFNALTYRKSFEAFPEFLEKIIKKYAI
ECIILFNDCRPIHKISLDLAKILQIPCYVFEEGYIRPDFITFEKSGVNAYSKIPKSKNFYLQYKEQTAFPIKKVQHSFRN
MAWFSFLYWFASFCLSQYFNNALHHRSLSPKEMFPWFLSLFRKWLYIWSEKNNNALILASKKKYFVAILQVHNDTQIKNH
FSGRRIENFIKNTIKSFAKNSKPKHFLVIKHHPMDRGYRNYKNFIKRQTKKYNITHRVIYIHDSHLPTLLHNALGCIVIN
STTGLSALLHNCPTKVCGNAFYDIDELTFQESLDKFWKATKKYKINLQLYKKFRSYLIDNTQINGSFYGKLSN

Nucleotide

• Length: 1182 bp

>NTDB_id=234416 CDV25_RS09375 WP_108911706.1 1890138..1891319(-) (kpsS) [Helicobacter apodemus strain SCJK1]
ATGCAATTAGATAACATAATTAAAAAATTTCAATCTCAAAATATACTTCTTTTGCAAGGTCCTGTGGGACCATTTTTCTA
TTCTTTATCAAAAAAACTTAAAGAGCAAGATTGCAAAGTTTATAAGATTAATTTTAATGGGGGAGATTTTTTATTTTATC
CATTTAATGCCTTAACCTATCGTAAAAGCTTCGAAGCTTTTCCTGAATTTTTAGAAAAAATTATTAAAAAATACGCAATT
GAATGCATTATTTTATTTAATGATTGTCGCCCTATTCACAAAATATCCCTTGACCTTGCTAAAATTTTACAAATCCCATG
CTATGTGTTTGAAGAGGGCTATATCCGTCCAGATTTCATTACTTTTGAAAAAAGCGGGGTTAATGCTTACTCTAAAATTC
CAAAAAGTAAAAATTTCTATCTTCAATATAAAGAACAAACTGCATTCCCGATAAAAAAAGTTCAACACTCTTTTAGGAAT
ATGGCTTGGTTTAGCTTTTTATATTGGTTTGCTTCCTTTTGTCTTAGCCAGTATTTTAACAACGCACTCCACCATAGAAG
TCTTAGTCCCAAAGAAATGTTTCCTTGGTTTTTATCACTTTTTAGAAAATGGCTTTATATTTGGAGTGAAAAAAACAACA
ATGCACTTATCCTAGCTTCAAAGAAAAAATACTTTGTTGCCATTTTGCAAGTCCATAATGATACGCAAATTAAGAATCAC
TTCAGCGGAAGAAGGATTGAAAACTTTATTAAAAATACCATTAAATCTTTTGCTAAAAACTCTAAACCCAAACACTTTTT
AGTTATCAAGCATCATCCTATGGATAGAGGGTATCGTAACTATAAAAACTTTATCAAAAGACAAACGAAAAAATATAATA
TTACCCATCGCGTTATTTACATCCATGATTCCCACTTACCAACTCTTCTCCATAATGCTTTAGGTTGCATTGTTATTAAT
AGCACAACAGGTTTATCTGCCCTTTTGCATAATTGCCCTACTAAAGTTTGCGGAAATGCCTTTTATGATATTGACGAATT
AACTTTTCAAGAAAGTTTAGATAAGTTTTGGAAAGCCACTAAAAAGTATAAAATCAATTTGCAACTTTACAAGAAATTTA
GAAGCTATCTTATTGACAATACGCAAATCAATGGAAGTTTTTATGGAAAACTCTCAAATTAA

Domains

Predicted by InterproScan.

• Capsule polysaccharide biosynthesis protein (Capsule_synth) (81-388)

3D structure

• AlphaFold DB: A0A2U8FFL1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
kpsS	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.608	97.455	0.483