Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CC204_RS12500 Genome accession   NZ_CP021874
Coordinates   2536892..2537437 (+) Length   181 a.a.
NCBI ID   WP_088270466.1    Uniprot ID   -
Organism   Enterococcus wangshanyuanii strain MN05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2531892..2542437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC204_RS12480 menH 2532728..2533558 (+) 831 WP_088270463.1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase -
  CC204_RS12485 menC 2533548..2534657 (+) 1110 WP_088270464.1 o-succinylbenzoate synthase -
  CC204_RS12490 - 2534707..2536233 (-) 1527 WP_088270465.1 AMP-binding protein -
  CC204_RS12495 rpsF 2536541..2536843 (+) 303 WP_069663270.1 30S ribosomal protein S6 -
  CC204_RS12500 ssb 2536892..2537437 (+) 546 WP_088270466.1 single-stranded DNA-binding protein Machinery gene
  CC204_RS12505 rpsR 2537463..2537702 (+) 240 WP_087641644.1 30S ribosomal protein S18 -
  CC204_RS12510 - 2537942..2539918 (+) 1977 WP_088270467.1 DHH family phosphoesterase -
  CC204_RS12515 rplI 2539956..2540408 (+) 453 WP_088270468.1 50S ribosomal protein L9 -
  CC204_RS12520 dnaB 2540686..2542056 (+) 1371 WP_088270469.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19862.48 Da        Isoelectric Point: 4.5778

>NTDB_id=234331 CC204_RS12500 WP_088270466.1 2536892..2537437(+) (ssb) [Enterococcus wangshanyuanii strain MN05]
MINNVVLVGRLTKDPDLRYTSSGSAVATFTLAVNRNFTNQSGNREADFINCVIWRKPAETMANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRQTQEGSAPSYNSGGGSFQSSQNNNFSGQNNFNQSSSQSSNNGMPDFDR
DADPFGGTGSTIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=234331 CC204_RS12500 WP_088270466.1 2536892..2537437(+) (ssb) [Enterococcus wangshanyuanii strain MN05]
ATGATTAACAACGTTGTATTAGTTGGAAGACTAACAAAAGATCCAGATTTACGATACACTTCTAGCGGTTCAGCTGTTGC
GACATTTACTTTAGCAGTAAATCGTAACTTTACGAATCAAAGTGGGAATCGTGAAGCAGATTTTATTAACTGTGTGATTT
GGCGTAAACCTGCTGAAACAATGGCAAACTATGCGCGTAAAGGTACATTGTTAGGTGTAACAGGTCGTATTCAAACTAGA
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTGACTGAAGTTGTTTGTGAAAATTTCCAGTTGTTAGAGTCTCGTTC
TGCATCAGAGCAAAGACAAACACAAGAAGGATCAGCACCGTCATACAATTCCGGCGGCGGAAGTTTCCAATCATCACAGA
ATAATAATTTTTCAGGACAAAACAATTTTAATCAATCATCCTCTCAGTCTAGCAATAACGGTATGCCTGATTTTGATAGA
GATGCTGATCCATTCGGTGGAACAGGATCGACTATTGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.983

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.297

100

0.586

Multiple sequence alignment