Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6W69_RS09140 Genome accession   NZ_CP027440
Coordinates   1716029..1716766 (+) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain 2012C-4502     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1711029..1721766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W69_RS09125 clpC 1711483..1714056 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6W69_RS09130 yfiH 1714186..1714917 (-) 732 WP_000040140.1 purine nucleoside phosphorylase YfiH -
  C6W69_RS09135 rluD 1714914..1715894 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6W69_RS09140 comL 1716029..1716766 (+) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  C6W69_RS09145 - 1716870..1718217 (+) 1348 Protein_1713 IS4-like element IS4 family transposase -
  C6W69_RS09155 raiA 1718478..1718819 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6W69_RS09160 pheL 1718923..1718970 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6W69_RS09165 pheA 1719069..1720229 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6W69_RS09170 tyrA 1720272..1721393 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=233922 C6W69_RS09140 WP_000197684.1 1716029..1716766(+) (comL) [Escherichia coli strain 2012C-4502]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=233922 C6W69_RS09140 WP_000197684.1 1716029..1716766(+) (comL) [Escherichia coli strain 2012C-4502]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384

Multiple sequence alignment