Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6W65_RS22040 Genome accession   NZ_CP027437
Coordinates   4292573..4293310 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2012C-4221     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4287573..4298310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W65_RS22000 - 4288002..4288601 (+) 600 WP_106906724.1 Ail/Lom family outer membrane beta-barrel protein -
  C6W65_RS22005 - 4288666..4289859 (+) 1194 WP_106906725.1 prophage tail fiber N-terminal domain-containing protein -
  C6W65_RS22010 - 4289870..4290475 (+) 606 WP_106906726.1 DUF4376 domain-containing protein -
  C6W65_RS22015 - 4290722..4290910 (+) 189 WP_097749596.1 ogr/Delta-like zinc finger family protein -
  C6W65_RS22020 - 4291136..4291276 (+) 141 WP_097749594.1 Hok/Gef family protein -
  C6W65_RS22025 - 4291418..4291714 (+) 297 WP_106906727.1 TM2 domain-containing protein -
  C6W65_RS22030 raiA 4291961..4292302 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6W65_RS22040 comL 4292573..4293310 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6W65_RS22045 rluD 4293445..4294425 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6W65_RS22050 yfiH 4294422..4295153 (+) 732 WP_000040140.1 purine nucleoside phosphorylase YfiH -
  C6W65_RS22055 clpC 4295283..4297856 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=233892 C6W65_RS22040 WP_000197686.1 4292573..4293310(-) (comL) [Escherichia coli strain 2012C-4221]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=233892 C6W65_RS22040 WP_000197686.1 4292573..4293310(-) (comL) [Escherichia coli strain 2012C-4221]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCGACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment