Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ND02_RS21770 Genome accession   NZ_CP027435
Coordinates   4101942..4102679 (+) Length   245 a.a.
NCBI ID   WP_000197674.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3599     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4096942..4107679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND02_RS21755 clpC 4097396..4099969 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ND02_RS21760 yfiH 4100099..4100830 (-) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  ND02_RS21765 rluD 4100827..4101807 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ND02_RS21770 comL 4101942..4102679 (+) 738 WP_000197674.1 outer membrane protein assembly factor BamD Machinery gene
  ND02_RS21780 raiA 4102950..4103291 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ND02_RS21785 pheL 4103395..4103442 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ND02_RS21790 pheA 4103541..4104701 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  ND02_RS21795 tyrA 4104744..4105865 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ND02_RS21800 aroF 4105876..4106946 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ND02_RS21805 yfiL 4107155..4107520 (+) 366 WP_001370532.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27825.41 Da        Isoelectric Point: 6.4874

>NTDB_id=233797 ND02_RS21770 WP_000197674.1 4101942..4102679(+) (comL) [Escherichia coli strain 2014C-3599]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
PDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=233797 ND02_RS21770 WP_000197674.1 4101942..4102679(+) (comL) [Escherichia coli strain 2014C-3599]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
CCCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376