Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CA592_RS06810 Genome accession   NZ_CP021838
Coordinates   1278670..1280466 (-) Length   598 a.a.
NCBI ID   WP_004891804.1    Uniprot ID   A0A178TDA8
Organism   Anoxybacillus flavithermus strain 52-1A     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273670..1285466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA592_RS06775 (CA592_06775) - 1273857..1274648 (-) 792 WP_004891788.1 NAD kinase -
  CA592_RS06780 (CA592_06780) - 1274655..1275293 (-) 639 WP_004891792.1 GTP pyrophosphokinase family protein -
  CA592_RS06785 (CA592_06785) - 1275306..1275662 (-) 357 WP_004891794.1 hypothetical protein -
  CA592_RS06790 (CA592_06790) - 1275790..1276380 (+) 591 WP_088223456.1 CYTH domain-containing protein -
  CA592_RS06795 (CA592_06795) - 1276377..1276985 (+) 609 WP_064214258.1 lytic transglycosylase domain-containing protein -
  CA592_RS06800 (CA592_06800) - 1277042..1277446 (+) 405 WP_064214257.1 globin -
  CA592_RS06805 (CA592_06805) - 1277430..1278242 (+) 813 WP_064214256.1 ClpXP adapter SpxH family protein -
  CA592_RS15350 - 1278481..1278645 (+) 165 WP_035018834.1 hypothetical protein -
  CA592_RS06810 (CA592_06810) pepF 1278670..1280466 (-) 1797 WP_004891804.1 oligoendopeptidase F Regulator
  CA592_RS06815 (CA592_06815) - 1280504..1281688 (-) 1185 WP_004891807.1 competence protein CoiA -
  CA592_RS06820 (CA592_06820) mecA 1281912..1282577 (+) 666 WP_004891810.1 adaptor protein MecA -
  CA592_RS06825 (CA592_06825) cls 1282635..1284143 (+) 1509 WP_004891813.1 cardiolipin synthase -
  CA592_RS06830 (CA592_06830) spxA 1284156..1284566 (-) 411 WP_088223457.1 transcriptional regulator SpxA -
  CA592_RS06835 (CA592_06835) - 1284818..1285009 (+) 192 WP_035018836.1 hypothetical protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 69617.50 Da        Isoelectric Point: 5.1292

>NTDB_id=233693 CA592_RS06810 WP_004891804.1 1278670..1280466(-) (pepF) [Anoxybacillus flavithermus strain 52-1A]
MAKTLPTRKDVPVEYTWRLEDIFATDEQWEQEFQQIQALLPKFSEYKGRLGESAQMLYEALQYRDHVFMRLGKLYAYAHM
RHDEDTANSLYQGLETRAEGLYAEAGQATAFIVPEILAMDEDVLRTFLQQYEPLRLYAHELDEMNRQRPHVLSEKEEALL
AQAAEVMNASSNTFGALNNADLRFPTITDENGEEVEVTHGRYIRFLESEDRRVRRDAFKAVYDTYRKYENTFASTLSGAV
KRNNFFARVRNYRSAREAALSKNQIPETVYDNLIETIHRYLPLLHRYVQLRKRVLGLDELHMYDLYTPLVKQVDMKVTYE
EAKDILLKGLTPLGDEYISIVKEGFDNRWVDVQETRGKRSGAYSSGSYGTNPYILMNWQDNVNNLFTLAHEFGHSVHSYY
TRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEKKKLYLLNHYLETFRGTVFRQTMFAEFEHMIHQMAQNGEAL
TAKVLTEKYYELNKTYFGDGVVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGTPAVERYIGFLKAGSS
DYPIEVLKKAGVDMTAPEPIEQACQVFEQKLQQLEQLL

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=233693 CA592_RS06810 WP_004891804.1 1278670..1280466(-) (pepF) [Anoxybacillus flavithermus strain 52-1A]
ATGGCAAAAACGTTGCCGACACGTAAAGACGTTCCGGTAGAGTACACATGGCGTCTCGAAGATATTTTCGCGACGGATGA
ACAATGGGAACAAGAATTTCAACAAATTCAAGCACTGCTTCCGAAATTTTCGGAGTATAAAGGCAGATTAGGGGAAAGCG
CACAGATGTTATACGAAGCGTTACAATATCGCGACCATGTGTTCATGCGACTAGGAAAATTATATGCGTACGCACATATG
CGCCATGACGAAGATACGGCTAATTCGCTTTATCAAGGATTGGAAACGAGAGCGGAAGGGTTGTATGCGGAAGCAGGTCA
AGCGACGGCGTTTATCGTGCCAGAAATTTTAGCGATGGATGAAGATGTGTTGCGCACGTTTTTACAACAATACGAGCCGC
TTCGTTTGTATGCGCATGAATTAGATGAAATGAACCGCCAACGTCCGCACGTGTTATCGGAAAAAGAAGAAGCGTTGCTT
GCACAGGCGGCGGAAGTGATGAACGCATCAAGCAATACGTTCGGGGCGTTAAATAATGCTGATTTGCGTTTTCCGACGAT
TACAGATGAAAACGGCGAAGAAGTGGAAGTGACGCACGGCCGTTACATTCGTTTCCTTGAAAGCGAAGATCGCCGCGTCC
GCCGCGATGCATTTAAAGCGGTATACGATACATATCGCAAATATGAAAATACGTTTGCGAGCACGTTAAGCGGAGCGGTG
AAGCGCAATAACTTTTTTGCGCGCGTTCGCAACTATCGCTCAGCGCGCGAGGCGGCATTAAGTAAAAACCAAATTCCTGA
AACGGTGTACGATAACTTAATTGAAACGATTCATCGCTATTTGCCACTTTTGCATCGTTACGTTCAATTGCGCAAGCGCG
TGCTCGGATTAGATGAATTGCATATGTACGATTTATATACGCCGCTTGTCAAACAAGTCGATATGAAAGTGACGTATGAA
GAAGCAAAAGACATATTGTTAAAAGGATTGACGCCACTAGGTGACGAATATATTTCGATCGTGAAAGAAGGGTTTGATAA
CCGTTGGGTTGACGTGCAAGAAACGCGCGGCAAACGAAGTGGAGCGTACTCGTCTGGTTCATATGGAACGAATCCGTACA
TTTTAATGAACTGGCAAGATAATGTGAACAACTTATTTACGCTTGCCCATGAGTTTGGCCATTCGGTGCATAGTTACTAT
ACGCGCAAATATCAGCCGTATCCGTACGGAAACTATTCGATTTTCGTTGCGGAAGTCGCATCGACGTGCAACGAAGCGTT
GTTGAACGATTATTTATTAAAAACGATCGATGACGAGAAGAAAAAGTTATATTTATTAAACCATTATTTAGAAACGTTCC
GAGGGACGGTGTTCCGTCAAACGATGTTTGCGGAGTTTGAACATATGATTCATCAAATGGCACAAAACGGGGAAGCGCTG
ACCGCCAAAGTATTGACGGAAAAATATTATGAGCTAAACAAAACGTATTTCGGGGATGGCGTCGTCATCGATGAAGAAAT
CGGTTTAGAATGGGCGCGCATTCCGCATTTTTACTACAACTATTATGTGTATCAATATGCGACAGGCTTTAGCGCTGCGA
CCGCATTAAGCAAACAAATTTTAGAAGAGGGTACACCTGCGGTTGAACGTTACATTGGATTTTTAAAAGCAGGAAGCTCC
GATTATCCGATTGAAGTGTTGAAAAAAGCAGGTGTCGATATGACAGCGCCTGAGCCGATTGAACAAGCGTGTCAAGTGTT
CGAACAAAAATTACAACAGCTTGAGCAACTATTGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-184)

Peptidase family M3 (Peptidase_M3)

(206-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178TDA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.731

98.829

0.482

Multiple sequence alignment