Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CA592_RS00930 Genome accession   NZ_CP021838
Coordinates   159896..161626 (+) Length   576 a.a.
NCBI ID   WP_088223206.1    Uniprot ID   -
Organism   Anoxybacillus flavithermus strain 52-1A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 154896..166626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA592_RS00905 (CA592_00905) - 155338..155550 (+) 213 WP_004889602.1 exodeoxyribonuclease VII small subunit -
  CA592_RS00910 (CA592_00910) - 155553..156425 (+) 873 WP_064214088.1 polyprenyl synthetase family protein -
  CA592_RS00915 (CA592_00915) dxs 156595..158481 (+) 1887 Protein_186 1-deoxy-D-xylulose-5-phosphate synthase -
  CA592_RS00920 (CA592_00920) - 158492..159334 (+) 843 WP_064214090.1 TlyA family RNA methyltransferase -
  CA592_RS00925 (CA592_00925) ahrC 159428..159877 (+) 450 WP_004889608.1 transcriptional regulator AhrC/ArgR -
  CA592_RS00930 (CA592_00930) recN 159896..161626 (+) 1731 WP_088223206.1 DNA repair protein RecN Machinery gene
  CA592_RS00935 (CA592_00935) spoIVB 161741..163018 (+) 1278 WP_004889610.1 SpoIVB peptidase -
  CA592_RS00940 (CA592_00940) spo0A 163236..164015 (+) 780 WP_004889612.1 sporulation transcription factor Spo0A -
  CA592_RS00945 (CA592_00945) - 164038..164184 (-) 147 WP_064498956.1 YycC family protein -
  CA592_RS00950 (CA592_00950) - 164242..164976 (+) 735 WP_004889614.1 glycerophosphodiester phosphodiesterase -
  CA592_RS00955 (CA592_00955) - 164968..165222 (-) 255 WP_004889615.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 65591.54 Da        Isoelectric Point: 4.8458

>NTDB_id=233685 CA592_RS00930 WP_088223206.1 159896..161626(+) (recN) [Anoxybacillus flavithermus strain 52-1A]
MLAELSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGETKAEIEGLFLLEQDDHPCYSK
CAELGIDISDGMIVLRRELTINGKSVCRVNGKLVTIATLREIGSTLVDIHGQHEHQELLDENKHLYLLDEYGGERIRDAL
KEYKALYAAYERVKRQLQKLNENEQQMAHRLDLLTFQLDEIQKAELQLDEDEQLMEERRKIVNFQKIYEALQSSYEALYG
EQRGLDWIGLVMNHLDHVSEIDSSLKQAQEVVSNCYYLLEEVAHQLREQLDQLEYDPLRLDEIESRLNEINHLKRKYGQT
VRDILEYAAKVEEEIETIQHRDDHIHKLQTELQSITADLLVEAKHISELRMQYAKQLIDDIHQELKDLYMEKTTFDVVFR
KPQGTYDDPLLDGTPVKLQSNGIDEVEFYISTNPGEPLKPLAKVASGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIAEKIYRVARHSQVLCISHLPQVAAMADTHLFIAKETIDGRTKTTVEALNEEEKINEISRMISGVEITDLTKQH
ARELLQLAAKTKNETA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=233685 CA592_RS00930 WP_088223206.1 159896..161626(+) (recN) [Anoxybacillus flavithermus strain 52-1A]
ATGTTAGCGGAGTTATCTATCAAAAATTTTGCCATTATTGAATCCCTTTCGCTTTCGTTTGAAAAAGGATTAACCGTTTT
AACTGGAGAAACGGGAGCGGGAAAATCCATTATTATTGATGCCATTCATTTGTTAATTGGCGGACGCGGCTCAGCAGAAT
TTGTTCGATACGGCGAAACAAAAGCAGAAATCGAAGGTCTTTTTTTGCTTGAACAAGATGATCACCCGTGTTACAGCAAA
TGTGCCGAGCTTGGCATCGATATAAGCGATGGGATGATTGTGCTTCGTCGAGAGCTAACGATAAACGGAAAAAGCGTCTG
TCGCGTAAACGGAAAATTAGTCACGATCGCGACATTGCGTGAAATTGGCTCCACACTTGTAGATATTCACGGACAACATG
AGCATCAAGAATTGCTTGATGAAAATAAGCATTTATATTTATTAGATGAATATGGAGGCGAGCGTATTCGTGACGCATTA
AAGGAATATAAAGCTTTATATGCGGCATACGAGCGAGTCAAGCGTCAACTGCAAAAGTTAAATGAGAATGAGCAACAAAT
GGCGCATCGTTTAGATTTATTAACTTTTCAGTTAGATGAAATTCAAAAAGCAGAGCTACAGTTAGATGAAGATGAACAGC
TAATGGAAGAGCGGCGAAAAATCGTTAACTTTCAGAAAATATACGAGGCGTTACAAAGTAGCTATGAAGCGCTTTACGGG
GAGCAACGCGGACTTGATTGGATTGGATTAGTGATGAATCATTTAGATCATGTGAGCGAAATCGATTCATCGTTGAAACA
AGCCCAAGAAGTTGTATCGAACTGTTATTATTTGTTAGAAGAAGTGGCCCATCAACTGCGTGAGCAATTAGATCAATTAG
AATACGACCCCCTTCGGCTTGACGAAATTGAAAGTCGCTTAAATGAAATTAACCATTTAAAACGCAAATACGGTCAAACG
GTGCGTGACATTTTAGAATATGCGGCGAAAGTGGAAGAAGAAATCGAAACGATTCAACATCGCGACGATCATATTCATAA
ATTACAAACTGAGCTTCAATCCATTACCGCTGATTTATTAGTTGAAGCGAAACATATAAGCGAATTGCGTATGCAATATG
CGAAACAACTGATCGACGACATTCATCAAGAGCTAAAAGATTTATACATGGAAAAAACGACGTTTGATGTTGTTTTTCGA
AAACCTCAAGGAACGTACGATGATCCATTGCTTGACGGAACGCCTGTAAAGTTGCAATCAAACGGAATAGATGAAGTTGA
ATTTTACATTTCGACAAATCCAGGCGAGCCGTTAAAACCGCTTGCGAAAGTTGCATCAGGCGGAGAATTGTCGCGCATGA
TGCTTGCTTTAAAAAGTATTTTTTCTAAACATCAGGGCGTCACTTCCATCATTTTTGATGAAGTCGATACCGGTGTAAGC
GGTCGCGTTGCTCAATCCATTGCGGAAAAAATTTATCGCGTGGCACGCCATTCGCAAGTATTATGCATTTCGCACTTACC
ACAAGTGGCAGCGATGGCGGATACGCATTTATTTATTGCAAAAGAAACGATAGACGGGCGAACAAAAACGACCGTCGAAG
CGCTAAATGAAGAAGAAAAAATTAACGAAATTAGCCGTATGATTTCTGGAGTGGAGATTACAGACTTAACGAAACAGCAT
GCACGTGAGTTATTGCAATTGGCGGCAAAAACGAAAAACGAAACAGCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.304

99.826

0.632

Multiple sequence alignment