Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AX062_RS28900 Genome accession   NZ_CP027390
Coordinates   5288857..5289594 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2015C-4944     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5283857..5294594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AX062_RS28865 yfiL 5284015..5284380 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  AX062_RS28870 aroF 5284590..5285660 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AX062_RS28875 tyrA 5285671..5286792 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AX062_RS28880 pheA 5286835..5287995 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  AX062_RS28885 pheL 5288094..5288141 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AX062_RS28890 raiA 5288245..5288586 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AX062_RS28900 comL 5288857..5289594 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AX062_RS28905 rluD 5289729..5290709 (+) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AX062_RS28910 yfiH 5290706..5291437 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  AX062_RS28915 clpC 5291567..5294140 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=233530 AX062_RS28900 WP_000197686.1 5288857..5289594(-) (comL) [Escherichia coli strain 2015C-4944]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=233530 AX062_RS28900 WP_000197686.1 5288857..5289594(-) (comL) [Escherichia coli strain 2015C-4944]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment