Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AYN27_RS05760 Genome accession   NZ_CP027380
Coordinates   1030738..1031475 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-3250     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025738..1036475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYN27_RS32345 - 1027289..1027381 (-) 93 Protein_1067 hypothetical protein -
  AYN27_RS05725 - 1027342..1028142 (+) 801 WP_394338098.1 contractile injection system protein, VgrG/Pvc8 family -
  AYN27_RS05730 - 1028185..1028445 (+) 261 WP_074435022.1 ogr/Delta-like zinc finger family protein -
  AYN27_RS05735 - 1028637..1028777 (+) 141 WP_000078920.1 Hok/Gef family protein -
  AYN27_RS05740 - 1029027..1029224 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  AYN27_RS05745 - 1029169..1029975 (+) 807 WP_106914109.1 site-specific DNA-methyltransferase -
  AYN27_RS05750 raiA 1030126..1030467 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AYN27_RS05760 comL 1030738..1031475 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AYN27_RS05765 rluD 1031610..1032590 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AYN27_RS05770 yfiH 1032587..1033318 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  AYN27_RS05775 clpC 1033448..1036021 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=233232 AYN27_RS05760 WP_000197686.1 1030738..1031475(-) (comL) [Escherichia coli strain 2013C-3250]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=233232 AYN27_RS05760 WP_000197686.1 1030738..1031475(-) (comL) [Escherichia coli strain 2013C-3250]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment