Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6P66_RS16900 Genome accession   NZ_CP027373
Coordinates   3256344..3257081 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 05-3629     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3251344..3262081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P66_RS16865 yfiL 3251503..3251868 (-) 366 WP_024194564.1 DUF2799 domain-containing protein -
  C6P66_RS16870 aroF 3252077..3253147 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6P66_RS16875 tyrA 3253158..3254279 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6P66_RS16880 pheA 3254322..3255482 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6P66_RS16885 pheL 3255581..3255628 (-) 48 WP_010723158.1 phe operon leader peptide -
  C6P66_RS16890 raiA 3255732..3256073 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6P66_RS16900 comL 3256344..3257081 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6P66_RS16905 rluD 3257216..3258196 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6P66_RS16910 yfiH 3258193..3258924 (+) 732 WP_001543096.1 purine nucleoside phosphorylase YfiH -
  C6P66_RS16915 clpC 3259054..3261627 (+) 2574 WP_001543094.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=233194 C6P66_RS16900 WP_000197686.1 3256344..3257081(-) (comL) [Escherichia coli strain 05-3629]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=233194 C6P66_RS16900 WP_000197686.1 3256344..3257081(-) (comL) [Escherichia coli strain 05-3629]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment