Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PD_RS05555 Genome accession   NC_004556
Coordinates   1260324..1260920 (-) Length   198 a.a.
NCBI ID   WP_011097918.1    Uniprot ID   Q87CK8
Organism   Xylella fastidiosa Temecula1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1255324..1265920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD_RS05530 (PD1052) - 1255458..1256411 (+) 954 WP_010894280.1 AAA family ATPase -
  PD_RS05535 (PD1053) - 1256414..1257373 (+) 960 WP_004084883.1 DUF58 domain-containing protein -
  PD_RS05540 (PD1054) - 1257366..1259423 (+) 2058 WP_011097916.1 transglutaminaseTgpA domain-containing protein -
  PD_RS05545 (PD1055) - 1259317..1259838 (+) 522 WP_027700741.1 Slp family lipoprotein -
  PD_RS05550 (PD1056) - 1259905..1260252 (-) 348 WP_014607772.1 histidine triad nucleotide-binding protein -
  PD_RS05555 (PD1057) recR 1260324..1260920 (-) 597 WP_011097918.1 recombination mediator RecR Machinery gene
  PD_RS05560 (PD1058) - 1261113..1261433 (-) 321 WP_004572794.1 YbaB/EbfC family nucleoid-associated protein -
  PD_RS05565 (PD1059) dnaX 1261440..1263071 (-) 1632 WP_004572793.1 DNA polymerase III subunit gamma/tau -
  PD_RS05575 (PD1061) - 1263700..1264200 (+) 501 WP_228446137.1 DNA replication protein DnaD -
  PD_RS12705 - 1264190..1264342 (+) 153 WP_012382609.1 hypothetical protein -
  PD_RS05580 - 1265215..1265514 (-) 300 WP_004572790.1 DNA adenine methylase -
  PD_RS13100 - 1265507..1265662 (-) 156 WP_014607774.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21791.85 Da        Isoelectric Point: 6.5786

>NTDB_id=23318 PD_RS05555 WP_011097918.1 1260324..1260920(-) (recR) [Xylella fastidiosa Temecula1]
MSTHLLEQLIDAFRILPGVGQKTAQRMAYHMLEREREGGQRLADVLSRAIEKIGHCTECRDFSETKICAICANSSRDRHQ
LCVVESPPDRLAIEQATGYRGLYFILQGRLSPLDGIGPHELGLDHLGQRLAAGEVTELIIATNATVEGETTAHYLALLAR
QHGIRPSRLAQGLPLGGELEYLDRGTLSHAFGTRTEVV

Nucleotide


Download         Length: 597 bp        

>NTDB_id=23318 PD_RS05555 WP_011097918.1 1260324..1260920(-) (recR) [Xylella fastidiosa Temecula1]
ATGAGTACACATTTGCTTGAGCAGTTAATTGACGCCTTCCGTATCTTGCCAGGTGTCGGTCAGAAGACCGCGCAGCGTAT
GGCCTACCATATGCTTGAGCGCGAGCGTGAAGGTGGACAGCGCTTGGCTGATGTGCTGAGCCGTGCGATTGAGAAAATTG
GTCATTGTACGGAGTGTCGTGACTTCAGTGAGACCAAAATCTGTGCGATCTGCGCTAACTCCAGCCGTGACCGTCATCAG
TTGTGCGTGGTCGAGTCCCCCCCTGATCGGCTGGCGATTGAGCAAGCCACTGGCTACCGTGGACTATATTTTATTTTGCA
GGGGCGCCTGTCCCCGCTGGATGGGATCGGCCCTCATGAACTTGGGTTGGACCATTTAGGACAACGTCTTGCTGCAGGTG
AGGTGACGGAGCTCATCATTGCGACTAATGCGACGGTGGAGGGTGAGACGACAGCGCACTACTTAGCGCTCCTGGCGCGC
CAACACGGTATACGCCCCAGCCGACTGGCACAAGGTTTGCCCTTGGGTGGGGAGCTGGAATACTTAGACCGCGGCACTCT
TTCGCACGCGTTCGGCACCCGTACTGAAGTGGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(39-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87CK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.75

96.97

0.424
  recR Bacillus subtilis subsp. subtilis str. 168

41.667

96.97

0.404
  recR Streptococcus pneumoniae R6

38.542

96.97

0.374

Multiple sequence alignment