Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6P71_RS24925 Genome accession   NZ_CP027368
Coordinates   4779183..4779920 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2014C-3307     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4774183..4784920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P71_RS24890 yfiL 4774342..4774707 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C6P71_RS24895 aroF 4774917..4775987 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6P71_RS24900 tyrA 4775998..4777119 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6P71_RS24905 pheA 4777162..4778322 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6P71_RS24910 pheL 4778420..4778467 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6P71_RS24915 raiA 4778571..4778912 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6P71_RS24925 comL 4779183..4779920 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6P71_RS24930 rluD 4780055..4781035 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6P71_RS24935 yfiH 4781032..4781763 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6P71_RS24940 clpC 4781893..4784466 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=233052 C6P71_RS24925 WP_000197686.1 4779183..4779920(-) (comL) [Escherichia coli strain 2014C-3307]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=233052 C6P71_RS24925 WP_000197686.1 4779183..4779920(-) (comL) [Escherichia coli strain 2014C-3307]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376