Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CCD88_RS10270 Genome accession   NZ_CP021724
Coordinates   1825129..1825593 (-) Length   154 a.a.
NCBI ID   WP_010981060.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-330     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1820129..1830593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD88_RS10250 (CCD88_10415) rfbC 1820842..1821399 (+) 558 WP_002228846.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  CCD88_RS10255 (CCD88_10420) - 1821442..1823460 (-) 2019 WP_002228844.1 OPT family oligopeptide transporter -
  CCD88_RS10260 (CCD88_10425) dnaJ 1823656..1824777 (-) 1122 WP_002215274.1 molecular chaperone DnaJ -
  CCD88_RS12540 - 1824859..1825017 (-) 159 WP_033909552.1 hypothetical protein -
  CCD88_RS10270 (CCD88_10430) comE 1825129..1825593 (-) 465 WP_010981060.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16529.75 Da        Isoelectric Point: 10.6993

>NTDB_id=232831 CCD88_RS10270 WP_010981060.1 1825129..1825593(-) (comE) [Neisseria meningitidis strain 12-330]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=232831 CCD88_RS10270 WP_010981060.1 1825129..1825593(-) (comE) [Neisseria meningitidis strain 12-330]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCACCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment