Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   CCD88_RS08985 Genome accession   NZ_CP021724
Coordinates   1598702..1599400 (-) Length   232 a.a.
NCBI ID   WP_002228941.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-330     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593702..1604400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD88_RS08970 (CCD88_09130) - 1593925..1595058 (-) 1134 WP_061824338.1 peptidylprolyl isomerase -
  CCD88_RS08975 (CCD88_09135) - 1595163..1597571 (-) 2409 WP_002260369.1 LPS-assembly protein LptD -
  CCD88_RS08980 (CCD88_09140) amgK 1597641..1598645 (+) 1005 WP_002218680.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  CCD88_RS08985 (CCD88_09145) dsbA1 1598702..1599400 (-) 699 WP_002228941.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  CCD88_RS13075 (CCD88_09150) - 1599427..1599618 (+) 192 WP_002260368.1 hypothetical protein -
  CCD88_RS08995 (CCD88_09155) murJ 1599618..1601156 (+) 1539 WP_002218676.1 murein biosynthesis integral membrane protein MurJ -
  CCD88_RS09000 (CCD88_09160) - 1601289..1602245 (+) 957 WP_002218675.1 YheT family hydrolase -
  CCD88_RS09005 (CCD88_09165) trpC 1602296..1603078 (+) 783 WP_002218674.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25287.88 Da        Isoelectric Point: 5.6016

>NTDB_id=232829 CCD88_RS08985 WP_002228941.1 1598702..1599400(-) (dsbA1) [Neisseria meningitidis strain 12-330]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMHTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=232829 CCD88_RS08985 WP_002228941.1 1598702..1599400(-) (dsbA1) [Neisseria meningitidis strain 12-330]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAATTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTCGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGCACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.138

100

0.991
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment