Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6P55_RS10680 Genome accession   NZ_CP027355
Coordinates   1872172..1872801 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2013C-4991     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1867172..1877801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P55_RS10665 helD 1867414..1869468 (-) 2055 WP_000420536.1 DNA helicase IV -
  C6P55_RS10670 yccF 1869591..1870037 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6P55_RS10675 yccS 1870047..1872209 (+) 2163 WP_000875061.1 YccS family putative transporter -
  C6P55_RS10680 sxy/tfoX 1872172..1872801 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6P55_RS10685 sulA 1873020..1873529 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  C6P55_RS10695 ompA 1873886..1874938 (+) 1053 WP_001361736.1 porin OmpA -
  C6P55_RS10700 matP 1875014..1875466 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6P55_RS10705 ycbZ 1875652..1877412 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=232759 C6P55_RS10680 WP_000839153.1 1872172..1872801(-) (sxy/tfoX) [Escherichia coli strain 2013C-4991]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=232759 C6P55_RS10680 WP_000839153.1 1872172..1872801(-) (sxy/tfoX) [Escherichia coli strain 2013C-4991]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment